DKFZ-ODCF / ACEseqWorkflow
Allele-specific copy number estimation with whole genome sequencing
☆23Updated last year
Related projects ⓘ
Alternatives and complementary repositories for ACEseqWorkflow
- Codes and Data for FFPEsig manuscript☆15Updated 10 months ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆25Updated 5 months ago
- Telomerecat: The telomere computational analysis tool☆20Updated 3 years ago
- Tools for processing and analyzing structural variants.☆32Updated 9 years ago
- Integrated copy number variation detection toolset☆25Updated 4 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆27Updated 2 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆27Updated last year
- R package for DNA methylation analysis☆17Updated 3 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Updated 9 years ago
- ☆21Updated 3 weeks ago
- A tool for sample swap identification in high throughput sequencing studies☆10Updated 2 years ago
- Third-generation fusion gene detection☆13Updated last year
- Main repository for Drews et al. (Nature, 2022)☆38Updated last year
- ☆13Updated 7 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆29Updated last year
- ☆21Updated 5 months ago
- ☆22Updated 3 months ago
- ☆23Updated 3 months ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆20Updated 2 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆27Updated 4 months ago
- BISulfite-seq CUI Toolkit☆17Updated 3 weeks ago
- MSKCC Reis-Filho Lab pipeline thingy☆16Updated 3 months ago
- ☆25Updated 8 months ago
- Comprehensive analysis of small RNA sequencing data☆30Updated 5 months ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆22Updated 3 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Genomic Association Tester☆29Updated last year