DanuserLab / u-segment3DLinks
Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with outputs of any 2D segmentation method.
☆34Updated last week
Alternatives and similar repositories for u-segment3D
Users that are interested in u-segment3D are comparing it to the libraries listed below
Sorting:
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆82Updated this week
- Guides and code for 3D nuclear instance segmentation☆22Updated 4 months ago
- A napari plugin for clustering objects according to their properties.☆88Updated this week
- Transformer-based cell tracking for live-cell microscopy☆109Updated this week
- ☆20Updated last month
- SplineDist: Automated Cell Segmentation with Spline Curves☆69Updated last year
- ☆12Updated last year
- Multiple file format reading directly into napari using pure Python☆39Updated last month
- MorphoFeatures code and data☆22Updated 2 years ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Updated last month
- A template repo used to make new napari plugins☆28Updated this week
- StarDist plugin for ImageJ☆30Updated 3 years ago
- ☆16Updated last month
- Accurate and efficient spot detection for microscopy data☆108Updated this week
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 6 months ago
- Utils and convenience functions for large-scale bio-image analysis.☆58Updated 3 months ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 3 years ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Updated 11 months ago
- 3D shape analysis using deep learning☆28Updated last month
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- ☆36Updated last year
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated 3 weeks ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated 2 years ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆85Updated 7 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆22Updated 11 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆88Updated last week
- Course and exercises on deep learning for microscopy image analysis☆19Updated 2 weeks ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Updated last month
- ☆14Updated last year