This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course
☆18Oct 30, 2017Updated 8 years ago
Alternatives and similar repositories for ONBI_image_analysis
Users that are interested in ONBI_image_analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Oct 12, 2019Updated 6 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Updated this week
- Interprocess environment manager 🧊☆15May 11, 2026Updated 2 months ago
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆29Jun 16, 2026Updated last month
- napari widgets for start-to-finish batch processing☆15Jun 1, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An Ilastik-like interactive pixel classifier.☆16Sep 5, 2024Updated last year
- ☆15Updated this week
- ☆24Sep 13, 2025Updated 10 months ago
- Graph-based Decoding for In Situ Sequencing☆10Jul 2, 2020Updated 6 years ago
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆20Updated this week
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆136Apr 9, 2020Updated 6 years ago
- simple standalone BigDataViewer for multiple N5 (or HDF5) datasets☆12Mar 6, 2026Updated 4 months ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆56Nov 13, 2025Updated 8 months ago
- Django-based OMERO.web client☆24Jun 17, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Running ImJoy plugins in Jupyter notebooks☆11Jan 10, 2023Updated 3 years ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆47Dec 4, 2025Updated 7 months ago
- ☆15Mar 10, 2020Updated 6 years ago
- ☆116Jul 10, 2026Updated last week
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Mar 13, 2023Updated 3 years ago
- Segment images utilizing pre-trained neural networks as feature extractors☆52Jul 3, 2026Updated 2 weeks ago
- Yet Another Pixel Classifier (based on deep learning)☆36Jun 27, 2024Updated 2 years ago
- Functional image processing☆17Oct 20, 2018Updated 7 years ago
- Running compute-intense parts of BigStitcher distributed☆31Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 7 months ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆73Jul 6, 2026Updated 2 weeks ago
- ☆19Feb 27, 2020Updated 6 years ago
- Deployment infrastructure for the Image Data Resource☆14Feb 21, 2026Updated 5 months ago
- Automated batch processing of cell and tissue microscopy image data in Napari☆22Updated this week
- This is a repository for the Automated Microscopy Control Environment.☆10Jan 6, 2022Updated 4 years ago
- Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…☆169Jul 10, 2026Updated last week
- Direct volume rendering with WebGL 2.☆12Jun 8, 2026Updated last month
- SplineDist: Automated Cell Segmentation with Spline Curves☆74Sep 29, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A tool for manual pointwise deformable registration using bigdataviewer.☆37Jun 4, 2026Updated last month
- A general illumination correction method for optical microscopy.☆45Aug 2, 2021Updated 4 years ago
- ☆15Apr 2, 2025Updated last year
- ☆22Updated this week
- ☆12Oct 23, 2025Updated 8 months ago
- python tools for BigDataViewer☆23Jul 2, 2026Updated 2 weeks ago
- Cellular Genetics Informatics Notebooks☆24Nov 7, 2025Updated 8 months ago