This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course
☆18Oct 30, 2017Updated 8 years ago
Alternatives and similar repositories for ONBI_image_analysis
Users that are interested in ONBI_image_analysis are comparing it to the libraries listed below
Sorting:
- ☆18Oct 12, 2019Updated 6 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Mar 4, 2026Updated 2 weeks ago
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆29Mar 5, 2026Updated 2 weeks ago
- napari widgets for start-to-finish batch processing☆15Mar 1, 2026Updated 3 weeks ago
- An Ilastik-like interactive pixel classifier.☆16Sep 5, 2024Updated last year
- ☆24Sep 13, 2025Updated 6 months ago
- Graph-based Decoding for In Situ Sequencing☆10Jul 2, 2020Updated 5 years ago
- ☆14Oct 24, 2025Updated 4 months ago
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆20Updated this week
- Segment images utilizing pre-trained neural networks as feature extractors☆48Feb 25, 2026Updated 3 weeks ago
- Django-based OMERO.web client☆23Updated this week
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Apr 9, 2020Updated 5 years ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 4 months ago
- simple standalone BigDataViewer for multiple N5 (or HDF5) datasets☆12Mar 6, 2026Updated 2 weeks ago
- Running ImJoy plugins in Jupyter notebooks☆11Jan 10, 2023Updated 3 years ago
- ☆112Updated this week
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Dec 4, 2025Updated 3 months ago
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Mar 13, 2023Updated 3 years ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 3 months ago
- Functional image processing☆17Oct 20, 2018Updated 7 years ago
- Yet Another Pixel Classifier (based on deep learning)☆36Jun 27, 2024Updated last year
- Deployment infrastructure for the Image Data Resource☆14Feb 21, 2026Updated last month
- Running compute-intense parts of BigStitcher distributed☆30Updated this week
- Lab for quantitative bioimage analysis experiments in Python☆19Feb 16, 2026Updated last month
- ☆13Mar 10, 2020Updated 6 years ago
- ☆21Aug 10, 2019Updated 6 years ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Mar 2, 2026Updated 2 weeks ago
- ☆19Feb 27, 2020Updated 6 years ago
- Direct volume rendering with WebGL 2.☆12Jan 18, 2024Updated 2 years ago
- This is a repository for the Automated Microscopy Control Environment.☆10Jan 6, 2022Updated 4 years ago
- ImageJ convenience layer for N5☆19Mar 12, 2026Updated last week
- OME model (specification, code generator, implementation)☆16Jan 22, 2026Updated 2 months ago
- Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…☆162Mar 3, 2026Updated 2 weeks ago
- ☆15May 16, 2024Updated last year
- SplineDist: Automated Cell Segmentation with Spline Curves☆72Sep 29, 2024Updated last year
- A general illumination correction method for optical microscopy.☆44Aug 2, 2021Updated 4 years ago
- QuPath extension for Cellsparse☆19May 6, 2025Updated 10 months ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆14Mar 16, 2026Updated last week
- ☆12Oct 23, 2025Updated 5 months ago