dwaithe / ONBI_image_analysisLinks
This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course
☆18Updated 8 years ago
Alternatives and similar repositories for ONBI_image_analysis
Users that are interested in ONBI_image_analysis are comparing it to the libraries listed below
Sorting:
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated 3 weeks ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55Updated 7 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆11Updated 2 years ago
- Generate markdown notebooks from ImageJ Macro☆26Updated 4 years ago
- ☆51Updated 7 months ago
- Imagej toolset to ease hyperstacks visualization and handling☆23Updated last year
- Browse your OMERO database from within napari.☆39Updated 3 weeks ago
- ☆41Updated last week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated 2 months ago
- Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ☆25Updated 3 years ago
- Multiple file format reading directly into napari using pure Python☆39Updated 2 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 3 months ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Updated 3 months ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆40Updated last week
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆18Updated this week
- Visualizing feature measurements on label images in napari☆10Updated last year
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Updated 2 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆99Updated last week
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆29Updated last month
- Z-stack Depth Colorcode ImageJ FIJI plugin☆25Updated last month
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated last year
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆17Updated last month
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- Particle tracking by solving linear assignment problem.☆61Updated 3 weeks ago
- Lectures for a napari training course☆50Updated 2 years ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last month
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 8 months ago
- Running compute-intense parts of BigStitcher distributed☆28Updated 2 weeks ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Updated last month