BiaPyX / BiaPyLinks
Open source Python library for building bioimage analysis pipelines
☆178Updated this week
Alternatives and similar repositories for BiaPy
Users that are interested in BiaPy are comparing it to the libraries listed below
Sorting:
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆140Updated last month
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 9 months ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆179Updated this week
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆114Updated this week
- Cloud-based data annotation tools for biological images☆81Updated last year
- Omnipose: a high-precision solution for morphology-independent cell segmentation☆115Updated last week
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆215Updated 6 months ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆142Updated 4 months ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆134Updated 5 years ago
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆71Updated last week
- ☆32Updated 2 years ago
- multimodal whole slide image registration in a graph structure☆87Updated last year
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆80Updated 2 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆54Updated 8 months ago
- ☆84Updated 3 months ago
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆230Updated 4 months ago
- Bio-Formats image file format to raw format converter☆94Updated last month
- PAthological QUpath Obsession - QuPath and Python conversations☆118Updated 6 months ago
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆80Updated last week
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆165Updated 2 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 2 months ago
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆60Updated 2 weeks ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated 2 months ago
- Read and write life sciences file formats☆140Updated last month
- A python algorithm for tracking cells in 3D time lapse images.☆60Updated 3 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated 4 months ago
- StarDist plugin for napari☆38Updated 10 months ago
- The ImageJ plugin to run deep-learning models☆97Updated last week
- An introduction to bioimage analysis - http://bioimagebook.github.io☆71Updated 2 weeks ago