Open source Python library for building bioimage analysis pipelines
☆215Oct 27, 2026Updated this week
Alternatives and similar repositories for BiaPy
Users that are interested in BiaPy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BiaPy GUI☆10Oct 5, 2026Updated 3 weeks ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆87Oct 22, 2026Updated last week
- MultiModal Big Image Data Sharing and Exploration☆20Jan 13, 2023Updated 3 years ago
- Segment Anything for Microscopy☆742Updated this week
- ☆15Sep 4, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A platform for compiling, analyzing, and exploring tracking data☆51Oct 22, 2026Updated last week
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆126Oct 21, 2026Updated last week
- Python libraries for loading, running and packaging bioimage.io models☆40Oct 22, 2026Updated last week
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆41Aug 7, 2026Updated 2 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 10 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Jul 26, 2026Updated 3 months ago
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆184Jul 30, 2026Updated 2 months ago
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆103Oct 13, 2026Updated 2 weeks ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆94Aug 24, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- InstanSeg is a pytorch-based cell and nucleus segmentation pipeline for fluorescence and brightfield microscopy images.☆249Sep 29, 2026Updated 3 weeks ago
- Scientific Dataset Quality Control and Data Exploration Tool☆29Updated this week
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆26Jun 3, 2026Updated 4 months ago
- QuPath extension for Cellsparse☆19May 6, 2025Updated last year
- Accurate and efficient spot detection for microscopy data☆146Jun 8, 2026Updated 4 months ago
- Microsopic Image Analyzer (MIA)☆28Aug 19, 2025Updated last year
- The ImageJ plugin to run deep-learning models☆99Oct 8, 2026Updated 2 weeks ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆132Oct 17, 2026Updated last week
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆53Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Comprehensive platform for automated large-scale connectomics. Segmentation and Detection models built upon Funke lab's algorithms.☆14Oct 9, 2026Updated 2 weeks ago
- ☆13Aug 16, 2024Updated 2 years ago
- ☆25May 16, 2023Updated 3 years ago
- Cell tracking and segmentation software☆210Oct 9, 2026Updated 2 weeks ago
- ☆45Oct 20, 2026Updated last week
- A module with convenience functions for writing Python code that interacts with OMERO.☆47Dec 4, 2025Updated 10 months ago
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆242Sep 11, 2023Updated 3 years ago
- Online documentation and reference for CLIJ☆28May 21, 2021Updated 5 years ago
- ☆41Oct 14, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Denoising via adaptive binning.☆14Aug 28, 2026Updated 2 months ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆158Jan 11, 2026Updated 9 months ago
- BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.☆137Oct 16, 2026Updated last week
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆131Feb 14, 2024Updated 2 years ago
- Cookiecutter for napari plugins☆72Nov 6, 2024Updated last year
- Linking napari layers with Matplotlib plots☆47Jul 1, 2026Updated 3 months ago
- An introduction to bioimage analysis - http://bioimagebook.github.io☆76Oct 21, 2026Updated last week