Alternatives and similar repositories for PICASSO

Users that are interested in PICASSO are comparing it to the libraries listed below

• NHPatterson / napari-wsireg
  Whole slide image registration through wsireg in napari.
  ☆13Updated 2 years ago
• Euro-BioImaging / EuBI-Bridge
  A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…
  ☆11Updated last week
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆35Updated 9 months ago
• VasylVaskivskyi / microaligner
  Image registration (alignment) software for large microscopy images
  ☆25Updated last year
• ksugar / qupath-extension-cellsparse
  QuPath extension for Cellsparse
  ☆19Updated 4 months ago
• peng-lab / BaSiCPy
  ☆87Updated 5 months ago
• weigertlab / spotiflow
  Accurate and efficient spot detection for microscopy data
  ☆99Updated last month
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆45Updated last week
• TheJacksonLaboratory / dask_relabeling
  A relabeling tool for tiled segmentation with Dask
  ☆16Updated 11 months ago
• glencoesoftware / raw2ometiff
  Raw format to OME-TIFF converter
  ☆55Updated last month
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆66Updated this week
• qupath / qupath-extension-instanseg
  The official QuPath extension for InstanSeg
  ☆25Updated 2 weeks ago
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆61Updated 3 months ago
• elgw / deconwolf
  Deconvolution of widefield microscopy images and generation of point spread functions
  ☆49Updated 3 weeks ago
• labsyspharm / ashlar
  ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
  ☆151Updated last month
• KerenLab / CellSighter
  ☆34Updated last year
• murphygroup / CellSegmentationEvaluator
  Evaluating the quality of a cell segmentation method without reference.
  ☆12Updated last month
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆29Updated last week
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆31Updated last week
• BIOP / ijp-kheops
  ☆20Updated last month
• saramcardle / FS2K
  Files associated with the From Samples To Knowledge 2025 QuPath training course
  ☆13Updated 4 months ago
• maweigert / spotipy
  ☆12Updated last year
• rosalindfranklininstitute / RedLionfish
  ☆32Updated last year
• royerlab / inTRACKtive
  Interactive visualization and sharing of cell tracking data in the browser
  ☆38Updated 2 weeks ago
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆67Updated 11 months ago
• PreibischLab / RS-FISH
  Tool for precise, interactive, fast and scalable FISH spot detection
  ☆50Updated 7 months ago
• qupath / qupath-extension-align
  QuPath extension to interactively align images
  ☆25Updated last month
• tpecot / WholeSlideImageAnalysisWithQuPath
  ☆27Updated 4 months ago
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆37Updated last year
• kreshuklab / go-nuclear
  Guides and code for 3D nuclear instance segmentation
  ☆22Updated 2 months ago