Alternatives and similar repositories for ultrack:

Users that are interested in ultrack are comparing it to the libraries listed below

• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆76Updated 2 weeks ago
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆84Updated this week
• CellMigrationLab / CellTracksColab
  A platform for compiling, analyzing, and exploring tracking data
  ☆44Updated last month
• weigertlab / trackastra
  ☆70Updated this week
• Kapoorlabs-CAPED / VollSeg
  Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…
  ☆33Updated last month
• peng-lab / BaSiCPy
  ☆70Updated last month
• stardist / stardist-napari
  StarDist plugin for napari
  ☆38Updated 8 months ago
• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆157Updated this week
• segment-anything-models-java / SAMJ-IJ
  An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.
  ☆65Updated 3 weeks ago
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆52Updated 6 months ago
• bioio-devs / bioio
  Image reading, metadata management, and image writing for Microscopy images in Python
  ☆86Updated last week
• aelefebv / nellie
  Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
  ☆63Updated last month
• weigertlab / spotiflow
  Accurate and efficient spot detection for microscopy data
  ☆75Updated 2 weeks ago
• oanegros / Blender_for_Biologists_2023
  ☆38Updated 9 months ago
• napari / napari-animation
  A napari plugin for making animations
  ☆84Updated 8 months ago
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆44Updated 2 weeks ago
• royerlab / inTRACKtive
  Interactive visualization and sharing of cell tracking data in the browser
  ☆26Updated this week
• fmi-basel / LSTree
  LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.
  ☆18Updated last year
• tlambert03 / nd2
  Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction
  ☆62Updated 2 weeks ago
• weigertlab / tarrow
  Time arrow prediction for live-cell microscopy
  ☆18Updated 10 months ago
• haesleinhuepf / devbio-napari
  ☆49Updated this week
• haesleinhuepf / BioImageAnalysisNotebooks
  Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
  ☆136Updated this week
• BIOP / ijl-utilities-wrappers
  Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)
  ☆37Updated 2 months ago
• haesleinhuepf / napari-skimage-regionprops
  Feature extraction for labeled objects in images using regionprops from scikit-image
  ☆50Updated 7 months ago
• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆45Updated 6 months ago
• haesleinhuepf / bia-bob
  BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.
  ☆112Updated last month
• NEUBIAS / training-resources
  Resources for teaching/preparing to teach bioimage analysis
  ☆56Updated last week
• aelefebv / Mitometer
  Automated mitochondrial segmentation and tracking.
  ☆31Updated 3 years ago
• sofroniewn / napari-training-course
  Lectures for a napari training course
  ☆50Updated last year
• fractal-napari-plugins-collection / napari-feature-classifier
  ☆23Updated 2 weeks ago