DanuserLab / u-unwrap3D
Transform 3D cell surfaces into different representations including topographic maps, 3D spheres, and 2D images for doing optimized quantification, data analysis and machine learning.
☆22Updated 3 months ago
Alternatives and similar repositories for u-unwrap3D:
Users that are interested in u-unwrap3D are comparing it to the libraries listed below
- MorphoFeatures code and data☆20Updated last year
- Process and analyze surfaces using vedo in napari.☆24Updated 9 months ago
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆28Updated last month
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆37Updated 3 months ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆15Updated 3 weeks ago
- 4D reconstruction of developmental trajectories using spherical harmonics☆20Updated last month
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆15Updated last week
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 2 months ago
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆11Updated last month
- Resources for teaching/preparing to teach bioimage analysis☆54Updated this week
- MiC is an ImageJ plugin to compare segmentation masks☆17Updated 7 months ago
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Updated 4 years ago
- Process images using SimpleITK in napari☆20Updated 4 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated this week
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 2 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆28Updated 3 weeks ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated 2 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 3 months ago
- Dataset EXploration & Processing☆31Updated last year
- ☆12Updated 4 years ago
- A tutorial of classical shape analysis methods☆11Updated last year
- ☆20Updated last year
- Accelerated Pixel and Object Classifiers (APOC)☆54Updated this week
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated last year
- python tools for BigDataViewer☆21Updated last month
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated last week
- Guides and code for 3D nuclear instance segmentation☆20Updated last month
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- ☆22Updated last year