DanuserLab / u-unwrap3DLinks
Transform 3D cell surfaces into different representations including topographic maps, 3D spheres, and 2D images for doing optimized quantification, data analysis and machine learning.
☆30Updated 2 months ago
Alternatives and similar repositories for u-unwrap3D
Users that are interested in u-unwrap3D are comparing it to the libraries listed below
Sorting:
- Process and analyze surfaces using vedo in napari.☆25Updated last year
- dask empowered fast4dreg☆15Updated 11 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Updated 3 weeks ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Updated last month
- Resources for teaching/preparing to teach bioimage analysis☆58Updated last week
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆22Updated 11 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated last week
- ☆51Updated 6 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated 2 weeks ago
- ☆36Updated last year
- MorphoFeatures code and data☆22Updated 2 years ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆29Updated 6 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 6 months ago
- ☆22Updated 2 years ago
- Multiple file format reading directly into napari using pure Python☆38Updated 2 weeks ago
- ☆52Updated this week
- Browse your OMERO database from within napari.☆39Updated 3 weeks ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆17Updated 3 months ago
- Track and lineage visualization with btrack and Napari☆46Updated last month
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆27Updated 8 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 4 months ago
- Particle tracking by solving linear assignment problem.☆60Updated 2 weeks ago
- A napari plugin for clustering objects according to their properties.☆88Updated this week
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 11 months ago
- ☆12Updated last year
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆69Updated 3 weeks ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated 3 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week