DanuserLab / u-unwrap3D
Transform 3D cell surfaces into different representations including topographic maps, 3D spheres, and 2D images for doing optimized quantification, data analysis and machine learning.
☆24Updated 5 months ago
Alternatives and similar repositories for u-unwrap3D:
Users that are interested in u-unwrap3D are comparing it to the libraries listed below
- Process and analyze surfaces using vedo in napari.☆23Updated 11 months ago
- 4D reconstruction of developmental trajectories using spherical harmonics☆21Updated 3 weeks ago
- Resources for teaching/preparing to teach bioimage analysis☆56Updated 2 weeks ago
- dask empowered fast4dreg☆11Updated 4 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 2 weeks ago
- python tools for BigDataViewer☆22Updated 3 months ago
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆17Updated last month
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆29Updated this week
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 4 months ago
- 3D/4D volumetric rendering of microscopy data☆22Updated 2 months ago
- A tutorial of classical shape analysis methods☆11Updated last year
- Pipeline for putting surface meshes into correspondence☆26Updated 2 years ago
- MorphoFeatures code and data☆20Updated last year
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 4 months ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆16Updated last month
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 2 months ago
- ☆20Updated last year
- Point based 3D segmentation plugin for FIJI☆9Updated last year
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 5 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated 3 weeks ago
- Python module for registering and fusing multi-view microscopy data☆23Updated last month
- ☆13Updated 5 years ago
- A napari plugin for filament analysis☆9Updated last year
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated 2 months ago
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated last week
- Tools for handling FIB-SEM data and annotations☆21Updated 2 weeks ago
- Accelerated Pixel and Object Classifiers (APOC)☆57Updated 2 months ago
- MiC is an ImageJ plugin to compare segmentation masks☆17Updated 9 months ago
- Use ImageJ functionality from napari☆29Updated 3 weeks ago