Deep Learning segmentation suite designed for 2D microscopy image segmentation
☆10Dec 17, 2021Updated 4 years ago
Alternatives and similar repositories for microscopy-dl-suite-tf
Users that are interested in microscopy-dl-suite-tf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Mar 11, 2026Updated 2 weeks ago
- ☆13Mar 26, 2025Updated last year
- open source version of VAMPIRE analysis : visually-aided morpho-phenotyping recognition☆30Apr 5, 2022Updated 3 years ago
- ☆13Apr 27, 2020Updated 5 years ago
- ☆12May 6, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- An ImageJ script to align and stitch three-dimensional tiles and quickly explore terabyte-sized microscopy datasets☆13Feb 22, 2022Updated 4 years ago
- ☆14Sep 29, 2020Updated 5 years ago
- ☆23Mar 26, 2021Updated 5 years ago
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 3 months ago
- pMoSS (p-value Model using the Sample Size) is a Python code to model the p-value as an n-dependent function using Monte Carlo cross-vali…☆16Mar 12, 2024Updated 2 years ago
- ImageJ macro for the analysis of foci (e.g. DNA damage) in nuclei/cells☆22Dec 9, 2025Updated 3 months ago
- some demo to show how to write imagepy plugin☆12Jun 25, 2020Updated 5 years ago
- Denoising via adaptive binning.☆13Jan 6, 2026Updated 2 months ago
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Mar 13, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Google Colab notebook for Cellpose☆10Aug 21, 2025Updated 7 months ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Apr 1, 2025Updated 11 months ago
- ilastik plugin for napari☆15Mar 2, 2026Updated 3 weeks ago
- Python package to export tensorflow models as DeepImageJ bundled models☆17Aug 10, 2022Updated 3 years ago
- STED simulation platform written in Python☆14Oct 4, 2024Updated last year
- Acquire bright field images along with the super resolution data and use it to track drift in 3D with nanometer precision!☆11Jun 22, 2023Updated 2 years ago
- The ImageJ plugin to run deep-learning models☆97Oct 28, 2025Updated 5 months ago
- QuPath extension for Cellsparse☆19May 6, 2025Updated 10 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆19Apr 6, 2022Updated 3 years ago
- Modified version of MultiStackRegistration, for use from scripts.☆12May 18, 2022Updated 3 years ago
- A relabeling tool for tiled segmentation with Dask☆17Sep 24, 2024Updated last year
- A Python module for accessing Hamamatsu DCIMG files☆14Jun 28, 2023Updated 2 years ago
- Robust and unbiased estimation of the background distribution for fluorescence microscopy.☆13Oct 13, 2025Updated 5 months ago
- ☆22Aug 17, 2023Updated 2 years ago
- A toolkit for interactive visualization of signal and image processing on Jupyter Notebooks.☆11Mar 31, 2022Updated 3 years ago
- in situ PSF retrieval for whole cells and tissues☆11Jul 24, 2021Updated 4 years ago
- A curated list of awesome Janelia software☆17Feb 26, 2025Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- some useful function to get Label from ROIs and vice versa , and more!☆11May 3, 2023Updated 2 years ago
- Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ☆26Jun 3, 2022Updated 3 years ago
- ☆52May 1, 2025Updated 10 months ago
- ☆11Mar 24, 2023Updated 3 years ago
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Jun 6, 2023Updated 2 years ago
- Analysis of TrackMate XML outputs in R☆17Mar 7, 2026Updated 3 weeks ago
- GIve easy, high-level access to ome-zarr fileset☆22Sep 22, 2025Updated 6 months ago