esgomezm / microscopy-dl-suite-tfLinks
Deep Learning segmentation suite designed for 2D microscopy image segmentation
☆10Updated 3 years ago
Alternatives and similar repositories for microscopy-dl-suite-tf
Users that are interested in microscopy-dl-suite-tf are comparing it to the libraries listed below
Sorting:
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 3 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated 3 weeks ago
- Little OBjects Segmentation and Tracking EnviRonment☆9Updated 5 years ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 4 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 8 months ago
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated 2 years ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 4 years ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆17Updated last month
- MiC is an ImageJ plugin to compare segmentation masks☆19Updated 2 months ago
- Process images using SimpleITK in napari☆21Updated 3 months ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆13Updated 3 weeks ago
- python tools for BigDataViewer☆22Updated 7 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆28Updated 3 months ago
- A Python module for accessing Hamamatsu DCIMG files☆14Updated 2 years ago
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆17Updated last year
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 3 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆16Updated 3 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆51Updated 3 months ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆17Updated 2 weeks ago
- ☆10Updated 8 months ago
- ☆13Updated 5 years ago
- A self-supervised denoising algorithm.☆27Updated last year
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆26Updated 10 months ago
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Updated 7 years ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 11 months ago
- The repository of NEUBIAS textbook 2021☆11Updated 3 years ago
- Track and lineage visualization with btrack and Napari☆45Updated 9 months ago
- Visualizing feature measurements on label images in napari☆10Updated last year