esgomezm / microscopy-dl-suite-tf
Deep Learning segmentation suite designed for 2D microscopy image segmentation
☆9Updated 3 years ago
Alternatives and similar repositories for microscopy-dl-suite-tf:
Users that are interested in microscopy-dl-suite-tf are comparing it to the libraries listed below
- Accelerated Pixel and Object Classifiers (APOC)☆55Updated last month
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- Little OBjects Segmentation and Tracking EnviRonment☆9Updated 4 years ago
- ☆13Updated 4 years ago
- Process images using SimpleITK in napari☆20Updated 5 months ago
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆15Updated last week
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆22Updated 3 years ago
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆16Updated last year
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated last month
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 4 months ago
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated 2 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 3 months ago
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated last week
- my first baby steps with Napari☆10Updated 5 years ago
- The repository of NEUBIAS textbook 2021☆10Updated 3 years ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆13Updated 2 weeks ago
- Control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated last month
- Optimize image processing workflows in napari☆17Updated 2 years ago
- python tools for BigDataViewer☆22Updated 2 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 5 months ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last month
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆24Updated 5 months ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 3 years ago
- ilastik plugin for napari☆14Updated 11 months ago
- Visualizing feature measurements on label images in napari☆10Updated 7 months ago
- ☆12Updated 4 years ago
- ☆21Updated last year
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆15Updated last week