edamontology / edam-bioimagingLinks
An ontology of imaging and related techniques and technologies, image processing and analysis, image data and formats, within bio- and other sciences.
☆11Updated 2 months ago
Alternatives and similar repositories for edam-bioimaging
Users that are interested in edam-bioimaging are comparing it to the libraries listed below
Sorting:
- An OMERO.web app for creating Figures from images in OMERO☆19Updated 2 weeks ago
- Jupyter Notebooks for the Image Data Resource☆19Updated last month
- BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆24Updated 2 weeks ago
- ☆41Updated 3 weeks ago
- MethodsJ2☆14Updated 3 years ago
- Galaxy Image Analysis is an ELIXIR Service for computer-based image analysis in Galaxy.☆20Updated last week
- OME model (specification, code generator, implementation)☆16Updated 2 weeks ago
- GIve easy, high-level access to ome-zarr fileset☆22Updated 3 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Updated 11 months ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆19Updated 6 months ago
- Schema.org Data Models for HTAN☆15Updated 4 months ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- Experimental micro-service for implementing the Zarr spec over HTTP☆20Updated this week
- A multi-dimensional spatial image data structure for scientific Python.☆43Updated 5 months ago
- A plugin for exporting RDF from OMERO☆15Updated last month
- CLIJ is deprecated. Visit CLIJ2☆56Updated 4 years ago
- ☆21Updated this week
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated last month
- Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery☆13Updated 9 months ago
- Python API and Jupyter widget for Vitessce☆60Updated this week
- Image registration (alignment) software for large microscopy images☆27Updated 2 years ago
- Python project containing Ice remoting code for OMERO☆27Updated last week
- Minimum Information about Tissue Imaging☆21Updated 2 years ago
- An Ilastik-like interactive pixel classifier.☆16Updated last year
- An introduction to OME-Zarr for big bioimaging data☆24Updated this week
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆20Updated last week
- An OMERO CLI plugin for creating transfer packets between OMERO servers.☆19Updated last month
- ☆29Updated last year
- Sphinx-based documentation for the Open Microscopy Environment☆23Updated last week