computational-cell-analytics / micro-samLinks
Segment Anything for Microscopy
☆547Updated last week
Alternatives and similar repositories for micro-sam
Users that are interested in micro-sam are comparing it to the libraries listed below
Sorting:
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆96Updated this week
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆226Updated 3 months ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆173Updated this week
- Scalable Instance Segmentation using PyTorch & PyTorch Lightning.☆139Updated last month
- ☆167Updated last month
- CellViT: Vision Transformers for Precise Cell Segmentation and Classification☆295Updated 2 months ago
- Codebase for "A Foundation Model for Cell Segmentation"☆94Updated 2 weeks ago
- StarDist - Object Detection with Star-convex Shapes☆1,043Updated last week
- ☆233Updated last year
- ☆189Updated last year
- (NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality …☆151Updated last year
- Open source Python library for building bioimage analysis pipelines☆170Updated last week
- Cell tracking and segmentation software☆115Updated this week
- ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy☆600Updated last month
- Deep Learning Library for Single Cell Analysis☆451Updated 9 months ago
- An introduction to deepcell and deep learning☆148Updated 7 months ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆137Updated last week
- a generalist algorithm for cellular segmentation with human-in-the-loop capabilities☆1,672Updated last week
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆77Updated last month
- Segment Anything Model (SAM) native Qt UI☆199Updated 9 months ago
- Cloud-based data annotation tools for biological images☆81Updated last year
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆67Updated this week
- QuPath extension for Segment Anything Model (SAM)☆108Updated 2 months ago
- Omnipose: a high-precision solution for morphology-independent cell segmentation☆113Updated last week
- Virtual Alignment of pathoLogy Image Series☆157Updated 5 months ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆114Updated last year
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆111Updated this week
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆159Updated 3 weeks ago
- BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.☆114Updated this week
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆215Updated 4 months ago