Alternatives and similar repositories for micro-sam

Users that are interested in micro-sam are comparing it to the libraries listed below

• sartorius-research / LIVECell
  ☆202Updated 2 years ago
• stardist / stardist
  StarDist - Object Detection with Star-convex Shapes
  ☆1,128Updated 5 months ago
• vanvalenlab / cellSAM
  Codebase for "A Foundation Model for Cell Segmentation"
  ☆113Updated last week
• kevinjohncutler / omnipose
  Omnipose: a high-precision solution for morphology-independent cell segmentation
  ☆125Updated last week
• HenriquesLab / ZeroCostDL4Mic
  ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy
  ☆621Updated this week
• FZJ-INM1-BDA / celldetection
  Scalable Instance Segmentation using PyTorch & PyTorch Lightning.
  ☆145Updated 6 months ago
• instanseg / instanseg
  ☆195Updated 2 weeks ago
• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆186Updated this week
• constantinpape / torch-em
  Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
  ☆110Updated last week
• clEsperanto / pyclesperanto_prototype
  GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
  ☆234Updated 9 months ago
• TIO-IKIM / CellViT
  CellViT: Vision Transformers for Precise Cell Segmentation and Classification
  ☆339Updated 3 months ago
• vanvalenlab / deepcell-tf
  Deep Learning Library for Single Cell Analysis
  ☆469Updated last year
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆187Updated this week
• segment-anything-models-java / SAMJ-IJ
  An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.
  ☆81Updated 2 weeks ago
• Lee-Gihun / MEDIAR
  (NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality …
  ☆153Updated last year
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆82Updated last year
• weigertlab / trackastra
  Transformer-based cell tracking for live-cell microscopy
  ☆109Updated this week
• royerlab / ultrack
  Cell tracking and segmentation software
  ☆156Updated last week
• ksugar / qupath-extension-sam
  QuPath extension for Segment Anything Model (SAM)
  ☆123Updated 3 months ago
• MIC-DKFZ / napari-sam
  ☆242Updated last year
• zaritskylab / DISCOVER
  Visual interpretability of image-based classification models by generative latent space disentanglement
  ☆12Updated 5 months ago
• haesleinhuepf / BioImageAnalysisNotebooks
  Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
  ☆151Updated last month
• kreshuklab / plant-seg
  A tool for cell instance aware segmentation in densely packed 3D volumetric images
  ☆123Updated this week
• vanvalenlab / deepcell-tracking
  Track cells and build cell lineages
  ☆35Updated last year
• hthierno / pytorch-stardist
  PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes
  ☆25Updated 2 years ago
• vanvalenlab / intro-to-deepcell
  An introduction to deepcell and deep learning
  ☆154Updated last year
• Bayer-Group / paquo
  PAthological QUpath Obsession - QuPath and Python conversations
  ☆123Updated 2 months ago
• MathOnco / valis
  Virtual Alignment of pathoLogy Image Series
  ☆189Updated 4 months ago
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆82Updated this week
• volume-em / cem-dataset
  Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.
  ☆29Updated 2 years ago