saalfeldlab / n5-ij
ImageJ convenience layer for N5
☆16Updated this week
Alternatives and similar repositories for n5-ij:
Users that are interested in n5-ij are comparing it to the libraries listed below
- python tools for BigDataViewer☆22Updated 2 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆15Updated last week
- Running compute-intense parts of BigStitcher distributed☆24Updated this week
- Commands and Classes for interfacing between Imaris and Fiji☆12Updated 5 months ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Updated 3 years ago
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- ☆13Updated 4 years ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆12Updated 2 weeks ago
- Control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated last month
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated 2 years ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆22Updated 3 years ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last month
- ImageJ plugin detecting and colocalizing particles of given size (vesicles, dots, etc on biological microscopy images)☆16Updated 2 years ago
- ☆10Updated last week
- A napari plugin to analysis point spread functions.☆12Updated 4 months ago
- ☆12Updated 4 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 3 months ago
- Acquire: a multi-camera video streaming software focusing on microscopy☆20Updated 4 months ago
- A Board Game to teach co-localization analysis☆12Updated 4 months ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆15Updated last week
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- Denoising via adaptive binning.☆12Updated 8 months ago
- ☆12Updated 5 years ago
- ☆17Updated 2 years ago
- Use ImageJ functionality from napari☆27Updated this week
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 6 months ago
- A tool for manual pointwise deformable registration using bigdataviewer.☆27Updated last month
- Place to discuss the future design of a universal microscope hardware interface☆15Updated 3 years ago
- Generate markdown notebooks from ImageJ Macro☆24Updated 4 years ago