weigertlab / napari-trackastra
napari plugin for trackastra
☆13Updated 5 months ago
Alternatives and similar repositories for napari-trackastra:
Users that are interested in napari-trackastra are comparing it to the libraries listed below
- dask empowered fast4dreg☆11Updated 4 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 4 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 4 months ago
- Process and analyze surfaces using vedo in napari.☆23Updated 11 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated 2 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆14Updated this week
- ☆12Updated 11 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated last year
- A napari plugin to analysis point spread functions.☆12Updated 2 weeks ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆16Updated last month
- 1d plotting in napari-based canvas.☆26Updated last week
- An implementation agnostic schema for describing a sequence of events during a multi-dimensional imaging acquisition.☆18Updated last week
- ☆10Updated 2 weeks ago
- Multi-Object Tracker using Integer Linear Equations☆30Updated last week
- Browse your OMERO database from within napari.☆36Updated last week
- Segment images by pixel classification based on pre-trained convolutional layer feature extraction☆31Updated last week
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated last week
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 4 months ago
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated this week
- ☆12Updated 2 weeks ago
- Annotate microscopy images for CNN classifier☆11Updated 2 years ago
- Denoising via adaptive binning.☆12Updated 9 months ago
- Visualizing feature measurements on label images in napari☆10Updated 8 months ago
- ☆47Updated 5 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated last week
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆22Updated 3 years ago
- ☆13Updated 4 years ago