weigertlab / napari-trackastra
napari plugin for trackastra
☆13Updated 4 months ago
Alternatives and similar repositories for napari-trackastra:
Users that are interested in napari-trackastra are comparing it to the libraries listed below
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 4 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆13Updated last week
- Process and analyze surfaces using vedo in napari.☆23Updated 10 months ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- A napari plugin to analysis point spread functions.☆12Updated 4 months ago
- ☆15Updated 2 years ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last month
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 3 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 5 months ago
- Multi-Object Tracker using Integer Linear Equations☆30Updated 2 weeks ago
- ☆13Updated 4 years ago
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated last week
- Segment images by pixel classification based on pre-trained convolutional layer feature extraction☆31Updated last month
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated last year
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 4 months ago
- Optimize image processing workflows in napari☆17Updated 2 years ago
- ☆47Updated 5 months ago
- Browse your OMERO database from within napari.☆36Updated last week
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated last month
- ☆12Updated 10 months ago
- A Board Game to teach co-localization analysis☆12Updated 4 months ago
- A napari plugin to view and edit metadata☆10Updated last year
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆15Updated last week
- ☆10Updated last week
- Denoising via adaptive binning.☆12Updated 8 months ago
- Use Napari Viewer to display CZI images☆11Updated 2 years ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆15Updated last week
- navigate - open source light-sheet microscope controls☆33Updated 2 weeks ago