aafkegros / MicroscopyNodesLinks
Loading and handling microscopy data in blender
☆143Updated last week
Alternatives and similar repositories for MicroscopyNodes
Users that are interested in MicroscopyNodes are comparing it to the libraries listed below
Sorting:
- ☆39Updated last year
- A napari plugin for clustering objects according to their properties.☆88Updated this week
- Image reading, metadata management, and image writing for Microscopy images in Python☆105Updated last month
- ☆51Updated 6 months ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆82Updated this week
- A napari plugin for making animations☆90Updated last month
- ☆36Updated last year
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆88Updated last week
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- Cell tracking and segmentation software☆156Updated last week
- Cookiecutter for napari plugins☆72Updated last year
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated 2 weeks ago
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆171Updated 6 months ago
- Accurate and efficient spot detection for microscopy data☆108Updated last month
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆71Updated 2 weeks ago
- Resources for teaching/preparing to teach bioimage analysis☆58Updated this week
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆85Updated 7 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆60Updated last year
- Feature extraction for labeled objects in images using regionprops from scikit-image☆52Updated 6 months ago
- A platform for compiling, analyzing, and exploring tracking data☆47Updated 3 months ago
- Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…☆156Updated 3 weeks ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Updated last month
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆70Updated 2 weeks ago
- Lectures for a napari training course☆51Updated 2 years ago
- Scientific Dataset Quality Control and Data Exploration Tool☆17Updated this week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated 3 weeks ago
- Creating figures and animations for multi-channel images with a focus on microscopy.☆78Updated 11 months ago
- User-affordable and versatile light-sheet microscopy system for cleared specimens☆25Updated 8 months ago
- Transformer-based cell tracking for live-cell microscopy☆109Updated this week
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆220Updated 10 months ago