Alternatives and similar repositories for PoCA

Users that are interested in PoCA are comparing it to the libraries listed below

• VasylVaskivskyi / microaligner
  Image registration (alignment) software for large microscopy images
  ☆27Updated 2 years ago
• hinderling / napari_pixel_classifier
  An Ilastik-like interactive pixel classifier.
  ☆16Updated last year
• wahlby-lab / graph-iss
  Graph-based Decoding for In Situ Sequencing
  ☆10Updated 5 years ago
• ABIF-McGill / MethodsJ2
  MethodsJ2
  ☆14Updated 3 years ago
• DanuserLab / u-shape3D
  Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…
  ☆31Updated 2 weeks ago
• aafkegros / Blender_for_Biologists_2023
  ☆39Updated last year
• AllenCell / aics-shparam
  ☆22Updated 9 months ago
• rosalindfranklininstitute / RedLionfish
  ☆36Updated last year
• miura / reproducible_bioimage_analysis
  ☆14Updated 5 years ago
• VeraPancaldiLab / tysserand
  Fast reconstruction of spatial networks from bioimages.
  ☆25Updated 9 months ago
• GuignardLab / napari-sc3D-viewer
  A plugin to visualise 3D spatial single cell omics
  ☆20Updated 3 months ago
• royerlab / inTRACKtive
  Interactive visualization and sharing of cell tracking data in the browser
  ☆45Updated last month
• imjoy-team / example-plugins
  ☆15Updated 5 years ago
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 5 years ago
• AllenCell / cvapipe_analysis
  Analysis of data produced by cvapipe for the variance paper
  ☆24Updated last year
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆35Updated last year
• BIOP / EasyXT-FIJI
  Commands and Classes for interfacing between Imaris and Fiji
  ☆13Updated last year
• quantumjot / CellTracking
  Cell tracking using TensorFlow and BayesianTracker
  ☆22Updated 4 years ago
• PreibischLab / RS-FISH
  Tool for precise, interactive, fast and scalable FISH spot detection
  ☆50Updated last year
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆46Updated 2 months ago
• NL-BioImaging / biomero
  BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster
  ☆24Updated 2 weeks ago
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆90Updated 2 weeks ago
• sofroniewn / napari-training-course
  Lectures for a napari training course
  ☆50Updated 2 years ago
• mobie / mobie-viewer-fiji
  ☆41Updated last week
• MIAnalyzer / MIA
  Microsopic Image Analyzer (MIA)
  ☆28Updated 5 months ago
• alexandrovteam / SpaceM
  ☆16Updated last year
• super-resolution / Locan
  Localization analysis software for super-resolution microscopy
  ☆22Updated 4 months ago
• NHPatterson / napari-wsireg
  Whole slide image registration through wsireg in napari.
  ☆12Updated 2 years ago
• Open-Science-Tools / nd2reader
  Pure Python library for reading NIS Elements ND2 images and metadata
  ☆48Updated last year
• fmi-basel / glib-nature2018-materials
  Image Processing Package for the Paper "Self-organization and symmetry breaking in intestinal organoid development"
  ☆11Updated 5 years ago