Alternatives and similar repositories for PoCA

Users that are interested in PoCA are comparing it to the libraries listed below

• hinderling / napari_pixel_classifier
  An Ilastik-like interactive pixel classifier.
  ☆16Updated last year
• wahlby-lab / graph-iss
  Graph-based Decoding for In Situ Sequencing
  ☆10Updated 5 years ago
• ABIF-McGill / MethodsJ2
  MethodsJ2
  ☆14Updated 3 years ago
• GuignardLab / napari-sc3D-viewer
  A plugin to visualise 3D spatial single cell omics
  ☆20Updated last month
• bigdataprocessor / bigdataprocessor2
  ☆23Updated 2 months ago
• VasylVaskivskyi / microaligner
  Image registration (alignment) software for large microscopy images
  ☆26Updated 2 years ago
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆35Updated last year
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆46Updated last week
• rosalindfranklininstitute / RedLionfish
  ☆36Updated last year
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆39Updated 2 months ago
• BIOP / EasyXT-FIJI
  Commands and Classes for interfacing between Imaris and Fiji
  ☆13Updated last year
• Immunodynamics-Engel-Lab / msiflow
  collection of mass spectrometry imaging workflows
  ☆20Updated last week
• bilayer-containers / bilayers
  ☆18Updated last week
• VeraPancaldiLab / tysserand
  Fast reconstruction of spatial networks from bioimages.
  ☆25Updated 7 months ago
• PreibischLab / RS-FISH
  Tool for precise, interactive, fast and scalable FISH spot detection
  ☆50Updated 9 months ago
• sofroniewn / napari-training-course
  Lectures for a napari training course
  ☆51Updated 2 years ago
• kreshuklab / go-nuclear
  Guides and code for 3D nuclear instance segmentation
  ☆22Updated 5 months ago
• AllenCell / cvapipe_analysis
  Analysis of data produced by cvapipe for the variance paper
  ☆23Updated 11 months ago
• AllenCell / aics-shparam
  ☆22Updated 6 months ago
• alexandrovteam / SpaceM
  ☆15Updated last year
• schienstockd / cecelia
  Framework for image and flow cytometry analysis
  ☆32Updated last month
• DanuserLab / u-shape3D
  Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…
  ☆30Updated 7 months ago
• funkelab / linajea
  ☆18Updated 2 years ago
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 4 years ago
• imjoy-team / example-plugins
  ☆15Updated 4 years ago
• NHPatterson / napari-wsireg
  Whole slide image registration through wsireg in napari.
  ☆12Updated 2 years ago
• miti-consortium / MITI
  Minimum Information about Tissue Imaging
  ☆21Updated 2 years ago
• Open-Science-Tools / nd2reader
  Pure Python library for reading NIS Elements ND2 images and metadata
  ☆48Updated 10 months ago
• mpicbg-scicomp / tissue_miner
  A toolkit to quantify cell dynamics in living tissues
  ☆12Updated 6 years ago
• linnarsson-lab / pysmFISH
  Analysis of smFISH data
  ☆11Updated 7 years ago