Alternatives and similar repositories for PoCA:

Users that are interested in PoCA are comparing it to the libraries listed below

• VasylVaskivskyi / microaligner
  Image registration (alignment) software for large microscopy images
  ☆22Updated last year
• hinderling / napari_pixel_classifier
  An Ilastik-like interactive pixel classifier.
  ☆16Updated 5 months ago
• kreshuklab / go-nuclear
  Guides and code for 3D nuclear instance segmentation
  ☆20Updated last month
• schienstockd / cecelia
  Framework for image and flow cytometry analysis
  ☆12Updated 3 weeks ago
• wahlby-lab / graph-iss
  Graph-based Decoding for In Situ Sequencing
  ☆10Updated 4 years ago
• ABIF-McGill / MethodsJ2
  MethodsJ2
  ☆14Updated 2 years ago
• bigdataprocessor / bigdataprocessor2
  ☆20Updated 3 weeks ago
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆33Updated 3 months ago
• NHPatterson / napari-wsireg
  Whole slide image registration through wsireg in napari.
  ☆13Updated last year
• BIOP / EasyXT-FIJI
  Commands and Classes for interfacing between Imaris and Fiji
  ☆12Updated 4 months ago
• zjniu / Piscis
  An automatic deep learning algorithm for spot detection in fluorescence microscopy images.
  ☆17Updated last month
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆41Updated 3 months ago
• rosalindfranklininstitute / RedLionfish
  ☆29Updated 10 months ago
• miura / reproducible_bioimage_analysis
  ☆14Updated 4 years ago
• GuignardLab / napari-sc3D-viewer
  A plugin to visualise 3D spatial single cell omics
  ☆22Updated 10 months ago
• jluethi / napari-feature-visualization
  Visualizing feature measurements on label images in napari
  ☆10Updated 6 months ago
• hms-dbmi / brainmapr
  R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …
  ☆17Updated 9 years ago
• krentzd / napari-clemreg
  An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)
  ☆16Updated last week
• alexandrovteam / SpaceM
  ☆13Updated 5 months ago
• haesleinhuepf / devbio-napari
  ☆46Updated 4 months ago
• DanuserLab / u-shape3D
  Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…
  ☆28Updated last month
• Kapoorlabs-CAPED / NapaTrackMater
  Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.
  ☆16Updated 2 months ago
• OakesLab / AFT-Alignment_by_Fourier_Transform
  ☆15Updated 6 months ago
• tlambert03 / imarispy
  Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer
  ☆12Updated 3 years ago
• spatial-image / spatial-image
  A multi-dimensional spatial image data structure for scientific Python.
  ☆37Updated 7 months ago
• AllenCell / aics-shparam
  ☆20Updated this week
• ilastik / ilastik-napari
  ilastik plugin for napari
  ☆14Updated 10 months ago
• sofroniewn / napari-training-course
  Lectures for a napari training course
  ☆50Updated last year
• kwolbachia / Visualization_toolset
  Imagej toolset to ease hyperstacks visualization and handling
  ☆22Updated 4 months ago
• quantixed / imagej-macros
  quantixed FIJI update site
  ☆16Updated last month