Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop between April and July 2024
☆39Jul 9, 2024Updated last year
Alternatives and similar repositories for BIDS-lecture-2024
Users that are interested in BIDS-lecture-2024 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A platform for compiling, analyzing, and exploring tracking data☆50Feb 2, 2026Updated 4 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated last year
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- ☆15Updated this week
- ☆16Jul 21, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆20May 1, 2025Updated last year
- A package for processing diSPIM images with GPU implementation☆14Dec 10, 2021Updated 4 years ago
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- dask empowered fast4dreg☆16Mar 11, 2026Updated 3 months ago
- A python script editor plugin for napari☆11Jul 8, 2023Updated 2 years ago
- QuPath extension for Cellsparse☆19May 6, 2025Updated last year
- Imagej toolset to ease hyperstacks visualization and handling☆23Feb 9, 2026Updated 4 months ago
- napari widgets for start-to-finish batch processing☆15Jun 1, 2026Updated 2 weeks ago
- A napari plugin to view and edit layer metadata☆13Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆52May 1, 2025Updated last year
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated 2 years ago
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 6 months ago
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆33Mar 24, 2026Updated 2 months ago
- ☆14Jan 22, 2026Updated 4 months ago
- Cookiecutter for napari plugins☆73Nov 6, 2024Updated last year
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆22Mar 12, 2026Updated 3 months ago
- ☆12Feb 23, 2026Updated 3 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 6 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated 11 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆62Apr 24, 2026Updated last month
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆157Jan 11, 2026Updated 5 months ago
- An ImageJ/FIJI plugin for multi-channel Hyperstack alignment (registration)☆13Dec 7, 2022Updated 3 years ago
- Cell tracking and segmentation software☆178Jun 3, 2026Updated last week
- A template repo used to make new napari plugins☆39May 1, 2026Updated last month
- ☆24Jun 1, 2026Updated 2 weeks ago
- ☆23Mar 26, 2021Updated 5 years ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Mar 26, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆17Nov 10, 2022Updated 3 years ago
- ilastik plugin for napari☆15Mar 2, 2026Updated 3 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Sep 11, 2021Updated 4 years ago
- An Ilastik-like interactive pixel classifier.☆16Sep 5, 2024Updated last year
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Feb 17, 2025Updated last year
- Feature extraction for labeled objects in images using regionprops from scikit-image☆56May 1, 2025Updated last year
- napari plugin for trackastra☆18Jun 8, 2026Updated last week