ScaDS / BIDS-lecture-2024Links
Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop between April and July 2024
☆38Updated last year
Alternatives and similar repositories for BIDS-lecture-2024
Users that are interested in BIDS-lecture-2024 are comparing it to the libraries listed below
Sorting:
- ☆51Updated 4 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- A minimal dependency napari plugin giving access to scikit-image functions☆18Updated 2 weeks ago
- StarDist plugin for napari☆39Updated last year
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 9 months ago
- A platform for compiling, analyzing, and exploring tracking data☆47Updated 3 weeks ago
- Track and lineage visualization with btrack and Napari☆45Updated 10 months ago
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- Lectures for a napari training course☆50Updated 2 years ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆28Updated 4 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆18Updated 4 months ago
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated 11 months ago
- A stable diffusion demo for napari☆11Updated last year
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated this week
- ☆32Updated last year
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆16Updated 4 months ago
- ☆19Updated 4 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 2 months ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆17Updated 2 months ago
- Visualizing feature measurements on label images in napari☆10Updated last year
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆84Updated this week
- Feature extraction for labeled objects in images using regionprops from scikit-image☆51Updated 4 months ago
- ☆11Updated last week
- ☆24Updated 2 years ago
- Robust and unbiased estimation of the background distribution for fluorescence microscopy.☆12Updated last year
- Running compute-intense parts of BigStitcher distributed☆26Updated last week
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 9 months ago