varemo / pianoLinks
piano - An R/Bioconductor package for gene set analysis
☆14Updated 3 years ago
Alternatives and similar repositories for piano
Users that are interested in piano are comparing it to the libraries listed below
Sorting:
- Docker Containers for Bioconductor☆88Updated this week
- single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.☆20Updated last week
- Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statisticall…☆38Updated 10 months ago
- Introduction to the Bioconductor project☆19Updated 3 months ago
- 🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 �…☆51Updated last week
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆65Updated last month
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆62Updated 8 months ago
- A package that provides data analysis pipeline for flow cytometry.☆80Updated 5 months ago
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆33Updated 2 months ago
- Interactive Cytometry Data Analysis☆66Updated 2 months ago
- Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.☆122Updated 5 years ago
- tools and notes for long reads analysis☆24Updated 10 months ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- This is the ensembldb development repository.☆36Updated 5 months ago
- DEvis: an R package for aggregation and visualization of differential expression data☆20Updated 5 years ago
- a pipeline of metabolomics data processing and quality control☆27Updated last month
- Create QC and summary reports for Alevin output☆31Updated last month
- R package with well defined templates for most common pipelines☆16Updated 6 months ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆61Updated 2 years ago
- ☆20Updated 7 months ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆95Updated last month
- Materials on the analysis of microarray expression data; focus on re-analysis of public data ( http://tinyurl.com/cruk-microarray)☆54Updated 8 years ago
- EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment☆55Updated 2 years ago
- MeSH Enrichment and Semantic analyses☆12Updated last month
- Transcript quantification import with automatic metadata detection☆67Updated last week
- A rust framework to make using alevin-fry even simpler☆61Updated 9 months ago
- R package providing query functionality to BioMart instances like Ensembl☆44Updated 2 weeks ago
- The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.☆35Updated last year
- R package for bcbio RNA-seq analysis.☆63Updated last year
- extract gene TSS site form gencode/ensembl/gencode database GTF file and export bed format file.☆12Updated 4 years ago