SNP and indel calls from multiple sequence alignment (MSA)
☆13Nov 11, 2022Updated 3 years ago
Alternatives and similar repositories for msa2snp
Users that are interested in msa2snp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Apr 2, 2024Updated 2 years ago
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆21Oct 12, 2025Updated 6 months ago
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Dec 27, 2025Updated 4 months ago
- Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram☆13Mar 10, 2026Updated last month
- fastHaN is a fast and scalable program for constructing haplotype networks for large samples☆21Feb 14, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆23Jan 21, 2026Updated 3 months ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- ☆14Oct 29, 2021Updated 4 years ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated 2 months ago
- ggideogram is a ggplot2 extension package for drawing chromosome diagrams☆17Nov 29, 2024Updated last year
- Integrating Ribo-SEQ Upstream and Downstream Analysis☆12Oct 14, 2024Updated last year
- ☆24Mar 17, 2026Updated last month
- MetaSNV, a metagenomic SNV calling pipeline.☆21Mar 25, 2022Updated 4 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Mar 6, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Python package for common tasks in bioinformatic.☆12Sep 24, 2025Updated 7 months ago
- Multivariate vIsualisatioN and OuTlier Analysis Using R☆14Apr 8, 2023Updated 3 years ago
- GWAS genetics Fine-mapping method☆17May 17, 2024Updated last year
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆39Apr 6, 2026Updated 3 weeks ago
- A procedure to find Fst outliers based on an inferred distribution of neutral Fst☆20Aug 26, 2019Updated 6 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- The BV-BRC Command Line Interface☆18Aug 6, 2025Updated 8 months ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆36Apr 20, 2026Updated 2 weeks ago
- ☆14Feb 9, 2026Updated 2 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Aug 27, 2020Updated 5 years ago
- Scalable high-throughput short-read open reading frame prediction☆12Jan 13, 2017Updated 9 years ago
- A friendly MCMC framework☆16Dec 13, 2025Updated 4 months ago
- PaiNN in jax☆11Jan 14, 2025Updated last year
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Oct 5, 2021Updated 4 years ago
- A toolkit for analyzing and visualizing phylogenetic placement data☆65Updated this week
- Simple Bash framework which provides argument parsing, usage output and text formatting variables☆19Jan 31, 2025Updated last year
- ☆23Oct 30, 2022Updated 3 years ago
- Rust crate to deal with phylogenetic trees☆14Dec 3, 2025Updated 5 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆13Sep 14, 2022Updated 3 years ago
- Structural space exploration of AlphaFold DB☆12Oct 8, 2021Updated 4 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Sep 11, 2024Updated last year
- This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"☆15Jun 7, 2023Updated 2 years ago
- The MafFilter genome alignment processor☆19Apr 10, 2026Updated 3 weeks ago
- ☆35Dec 24, 2020Updated 5 years ago
- A SARS-CoV-2 Mutation Pattern Query Tool☆17Mar 21, 2023Updated 3 years ago