JianYang-Lab / crussmap
crussmap is a faster tool to convert genome coordinates between difference reference assemblies.
☆14Updated last year
Alternatives and similar repositories for crussmap:
Users that are interested in crussmap are comparing it to the libraries listed below
- scripts used for processing and analyzing data in the article.☆13Updated 5 years ago
- A graph-based pipeline used to call/genotype snvs/indels/SVs from NGS data☆16Updated 6 months ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 4 years ago
- the miscellaneous analysis scripts used in the research of pan-Zea genome and genetics☆16Updated 2 years ago
- Workflow to construct linear representation of pan genome from deep WGS data and public assemblies☆28Updated last year
- The cattle Genotype-Tissue Expression atlas v1☆23Updated 2 years ago
- A comprehensive pipeline for RNAseq data analysis☆22Updated 7 months ago
- ☆23Updated 2 years ago
- ☆10Updated 3 years ago
- Working on cotton resequencing☆11Updated 4 years ago
- A collection of tools for Genome Assembly analysis☆20Updated 10 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆38Updated 6 months ago
- Full-Length RNA Analysis pipeline developted by BGI RD group.☆18Updated 2 years ago
- ☆15Updated 2 years ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- The ECCsplorer is a bioinformatics pipeline for the automated detection of extrachromosomal circular DNA (eccDNA) from paired-end read da…☆20Updated 11 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Scripts that used in our chicken T2T manuscript.☆19Updated last year
- Variant annotation and merging pipeline☆32Updated 2 months ago
- ☆18Updated 8 months ago
- ☆23Updated 2 years ago
- tutorial on pggb☆32Updated 2 months ago
- Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.☆20Updated 3 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆40Updated 5 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- ☆42Updated last year
- A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert be…☆19Updated last year
- 4C-seq processing pipeline☆23Updated 2 weeks ago
- ☆37Updated 2 months ago
- Structural variant merging tool☆49Updated 7 months ago