Alternatives and similar repositories for crussmap

Users that are interested in crussmap are comparing it to the libraries listed below

• hanlinqian / IntegrativeNetworkMap
  ☆24Updated 2 years ago
• schmitzlab / Widespread-Long-range-Cis-Regulatory-Elements-in-the-Maize-Genome
  scripts used for processing and analyzing data in the article.
  ☆13Updated 5 years ago
• hewm2008 / LDBlockShow
  LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
  ☆33Updated 3 months ago
• Shuhua-Group / CPC-graph-based-NGS-pipeline
  A graph-based pipeline used to call/genotype snvs/indels/SVs from NGS data
  ☆16Updated last month
• grimmlab / permGWAS
  Efficient Permutation-based GWAS for Normal and Skewed Phenotypic Distributions
  ☆33Updated 10 months ago
• LappalainenLab / lorals_paper_code
  ☆27Updated 3 years ago
• sunyumail93 / PipeRNAseq
  A comprehensive pipeline for RNAseq data analysis
  ☆22Updated last year
• Jwindler / Assembly_tools
  A collection of tools for Genome Assembly analysis
  ☆20Updated last year
• songbowang125 / SVision-pro
  ☆45Updated last month
• kcakdemir / HiCPlotter
  “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
  ☆19Updated 5 years ago
• yiliao1022 / Pepper3Dgenome
  ☆15Updated 3 years ago
• mortazavilab / cerberus
  ☆19Updated last year
• fengcong3 / HAPPE
  A tool to visualize the haplotype pattern and various information in excel.
  ☆20Updated 7 months ago
• lurebgi / chicken-T2T
  Scripts that used in our chicken T2T manuscript.
  ☆22Updated 2 years ago
• MorrellLAB / File_Conversions
  Scripts to convert between file formats for various analyses
  ☆15Updated 5 months ago
• StevenVB12 / Tutorial_pan_genomics
  Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…
  ☆18Updated 4 months ago
• shuliliu / cattleGTEx
  The cattle Genotype-Tissue Expression atlas v1
  ☆27Updated 2 years ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆43Updated 3 months ago
• LAILAB-CAU / update-Mo17
  ☆28Updated 2 years ago
• alisi1989 / RFMIX2-Pipeline-to-plot
  Here we present a method to plot the outputs of RFMIX version 2
  ☆27Updated last year
• ACAD-UofA / Guide-to-manipulating-PLINK-EIG-and-VCF-files
  A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert be…
  ☆23Updated 2 years ago
• FemeniasM / ExplorATEproject
  R package to explore active transposable elements with RNA-seq data
  ☆21Updated 2 years ago
• YinYuan-001 / muntjac_code
  ☆10Updated 4 years ago
• mdozmorov / SNP_notes
  Notes on SNP-related tools and genome variation analysis
  ☆28Updated last month
• Wendellab / CisTransRegulation
  Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum
  ☆16Updated last year
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆42Updated last year
• hewm2008 / VCF2Dis
  VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files
  ☆48Updated last month
• weng-lab / TEMP2
  Algorithm to detect germline and de novo transposon insertions
  ☆30Updated last month
• Augroup / miniQuant
  Improving gene isoform quantification with miniQuant
  ☆29Updated last week
• dixonlab / hic_breakfinder
  ☆37Updated 6 years ago