JianYang-Lab / crussmapLinks
crussmap is a faster tool to convert genome coordinates between difference reference assemblies.
☆20Updated 2 years ago
Alternatives and similar repositories for crussmap
Users that are interested in crussmap are comparing it to the libraries listed below
Sorting:
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆33Updated 2 months ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 5 years ago
- ☆24Updated 2 years ago
- A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert be…☆22Updated 2 years ago
- A graph-based pipeline used to call/genotype snvs/indels/SVs from NGS data☆16Updated 3 weeks ago
- ☆27Updated 3 years ago
- scripts used for processing and analyzing data in the article.☆13Updated 5 years ago
- Data Simulation for Life Science and Breeding☆38Updated 3 months ago
- Scripts to convert between file formats for various analyses☆16Updated 4 months ago
- tutorial on pggb☆35Updated 8 months ago
- A haplotype analysis toolkit for natural variation study.☆30Updated last year
- Here we present a method to plot the outputs of RFMIX version 2☆27Updated last year
- ☆27Updated 2 years ago
- Efficient Permutation-based GWAS for Normal and Skewed Phenotypic Distributions☆33Updated 10 months ago
- ☆44Updated 2 weeks ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆57Updated 2 weeks ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆48Updated 3 weeks ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 10 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated 2 months ago
- ☆19Updated 2 years ago
- The cattle Genotype-Tissue Expression atlas v1☆27Updated 2 years ago
- ☆10Updated 3 years ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆16Updated last year
- Algorithm to detect germline and de novo transposon insertions☆30Updated last month
- Scripts that used in our chicken T2T manuscript.☆21Updated 2 years ago
- A tool to visualize the haplotype pattern and various information in excel.☆20Updated 6 months ago
- A comprehensive pipeline for RNAseq data analysis☆22Updated last year
- MEGAnE☆31Updated 2 years ago
- Perform GWAS with gemma in a simple pipeline☆27Updated 4 months ago
- Variant annotation and merging pipeline☆39Updated last month