Alternatives and similar repositories for crussmap

Users that are interested in crussmap are comparing it to the libraries listed below

• schmitzlab / Widespread-Long-range-Cis-Regulatory-Elements-in-the-Maize-Genome
  scripts used for processing and analyzing data in the article.
  ☆13Updated 6 years ago
• hanlinqian / IntegrativeNetworkMap
  ☆23Updated 3 years ago
• Shuhua-Group / CPC-graph-based-NGS-pipeline
  A graph-based pipeline used to call/genotype snvs/indels/SVs from NGS data
  ☆17Updated 5 months ago
• grimmlab / permGWAS
  Efficient Permutation-based GWAS for Normal and Skewed Phenotypic Distributions
  ☆33Updated last year
• hewm2008 / LDBlockShow
  LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
  ☆36Updated 6 months ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆46Updated 6 months ago
• shohei-kojima / MEGAnE
  MEGAnE
  ☆33Updated 2 years ago
• LappalainenLab / lorals
  ☆38Updated 2 years ago
• xihaoli / STAARpipeline-Tutorial
  The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…
  ☆34Updated last year
• songbowang125 / SVision-pro
  ☆49Updated 4 months ago
• YuetongXU / CropGBM
  ☆25Updated 6 months ago
• alisi1989 / RFMIX2-Pipeline-to-plot
  Here we present a method to plot the outputs of RFMIX version 2
  ☆31Updated last year
• Jwindler / Assembly_tools
  A collection of tools for Genome Assembly analysis
  ☆22Updated last year
• sunyumail93 / PipeRNAseq
  A comprehensive pipeline for RNAseq data analysis
  ☆22Updated last year
• mdozmorov / SNP_notes
  Notes on SNP-related tools and genome variation analysis
  ☆28Updated 5 months ago
• pangenome / pggb-workshop
  tutorial on pggb
  ☆36Updated last year
• YinYuan-001 / muntjac_code
  ☆11Updated 4 years ago
• mortazavilab / cerberus
  ☆20Updated 2 weeks ago
• LappalainenLab / lorals_paper_code
  ☆27Updated 3 years ago
• jonassibbesen / rpvg
  Method for inferring path posterior probabilities and abundances from pangenome graph read alignments
  ☆59Updated 4 months ago
• Illumina / RepeatCatalogs
  ☆23Updated 4 years ago
• hewm2008 / VCF2Dis
  VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files
  ☆53Updated 5 months ago
• Magdoll / SQANTI2
  SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3
  ☆38Updated 5 years ago
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆47Updated last year
• johanzi / gwas_gemma
  Perform GWAS with gemma in a simple pipeline
  ☆27Updated 9 months ago
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆25Updated 5 years ago
• FAANG / analysis-TAGADA
  GENE-SWitCH project RNA-Seq analysis pipeline
  ☆29Updated 11 months ago
• christopher-vollmers / Mandalorion
  Pipeline to identify isoforms from full-length cDNA sequencing data
  ☆26Updated 3 months ago
• yiliao1022 / Pepper3Dgenome
  ☆16Updated 3 years ago
• ShujiaHuang / basevar
  This is the official development repository for BaseVar, which call variants for large-scale ultra low-pass (<1.0x) WGS data, especially …
  ☆27Updated 6 months ago