h836472 / ContScoutLinks
ContScout sequence contamination filter tool
☆20Updated last month
Alternatives and similar repositories for ContScout
Users that are interested in ContScout are comparing it to the libraries listed below
Sorting:
- Multi-genome synteny block visualization tool☆42Updated 5 months ago
- Automatic evaluation of HGTs☆29Updated 4 months ago
- ☆25Updated 10 months ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 9 months ago
- Genome alignment and synteny plots☆30Updated 2 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆26Updated 3 months ago
- Dinoflagellate Annotation Workflow☆15Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- An R package to infer and analyze synteny networks from protein sequences☆30Updated 6 months ago
- Diploid genome assembly analysis tools☆14Updated 9 months ago
- Robust identification of orthologous Synteny with the Orthology Index☆21Updated last week
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆19Updated 5 years ago
- Yet another Hi-C scaffolding tool☆20Updated 8 months ago
- Domain based annotation of transposable elements☆19Updated last month
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 4 months ago
- ☆20Updated last year
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Updated 11 months ago
- ☆32Updated 4 years ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 3 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆31Updated 5 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆16Updated 4 years ago
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 6 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated last year
- Genome-Genome circle synteny☆25Updated last year
- Tool for fully-automated inference of species trees from raw genome assemblies☆37Updated 3 weeks ago
- Within-species genome-wide dN/dS estimation from very many genomes☆21Updated 4 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago