h836472 / ContScout
ContScout sequence contamination filter tool
☆20Updated 3 months ago
Alternatives and similar repositories for ContScout:
Users that are interested in ContScout are comparing it to the libraries listed below
- Multi-genome synteny block visualization tool☆33Updated 3 months ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated 10 months ago
- Automatic evaluation of HGTs☆28Updated 2 months ago
- ☆23Updated 8 months ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 7 months ago
- Genome alignment and synteny plots☆30Updated last year
- Domain based annotation of transposable elements☆19Updated 2 months ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 7 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- Dinoflagellate Annotation Workflow☆14Updated 2 years ago
- ☆32Updated 4 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆25Updated 2 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆16Updated 4 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆25Updated last month
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 4 months ago
- Genome size estimation from long read overlaps☆52Updated last week
- Gene tree - species tree reconciliation from gene tree distributions☆27Updated 5 months ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆19Updated 4 years ago
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Updated 3 years ago
- Yet another Hi-C scaffolding tool☆19Updated 6 months ago
- An R package to infer and analyze synteny networks from protein sequences☆29Updated 4 months ago
- Diploid genome assembly analysis tools☆14Updated 7 months ago
- Toolkit for evolutionary analyses of linkage groups☆31Updated 9 months ago
- ☆19Updated 2 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated 2 months ago
- FastK based version of Merqury☆24Updated last week
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆40Updated 3 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆29Updated 3 months ago