zhangfumin / domestication
☆18Updated 2 years ago
Alternatives and similar repositories for domestication
Users that are interested in domestication are comparing it to the libraries listed below
Sorting:
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆34Updated last year
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 5 years ago
- scripts used in Rice Pangenome Projects (Evolution).☆10Updated last year
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆41Updated last month
- ☆12Updated 5 years ago
- Tutorial on using popular tools for learning about population history☆50Updated 6 years ago
- Use hifi to assembly the Sol genome, and dissecting Sol evo☆17Updated last year
- Scripts of population genomics analysis☆35Updated 7 years ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆38Updated 8 months ago
- SambaR: Snp datA Management and Basic Analyses in R☆28Updated last week
- Bulked-Segregant Analysis using vcf file with or without parents☆25Updated 4 months ago
- Automated pipeline for running CoalHMM☆13Updated last year
- Codes for the lettuce resequencing project in 2020☆30Updated 3 years ago
- Hapmap-v1☆11Updated 5 years ago
- ☆16Updated 7 months ago
- Tutorials on evolutionary genomics☆43Updated 3 years ago
- Tutorial about R package PopGenome☆41Updated 6 years ago
- a Semi-automated pipeline for assembling T2T genome☆17Updated 3 weeks ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆26Updated 2 years ago
- ☆16Updated 2 years ago
- Sex assignment through coverage☆17Updated last year
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- Scripts and resources for the haploblocks manuscript☆16Updated 5 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆29Updated 3 months ago
- This is a method to find telomeres and centromeres in plants.☆40Updated last year
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- ☆40Updated last year