Alternatives and similar repositories for domestication

Users that are interested in domestication are comparing it to the libraries listed below

• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆39Updated last year
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆28Updated 5 years ago
• popgenDK / SATC
  Sex assignment through coverage
  ☆20Updated 6 months ago
• simonhmartin / tutorials
  Tutorials on evolutionary genomics
  ☆46Updated 3 years ago
• GoreLab / Sorghum-HapMap
  Hapmap-v1
  ☆12Updated 5 years ago
• ellenbell / FasTE
  A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…
  ☆27Updated 3 years ago
• ShiuLab / PseudogenePipeline
  ☆41Updated 2 years ago
• JiangYuLab / CNVcaller
  ☆42Updated last year
• yywyaoyaowu / SolEvo_PotatoDele
  Use hifi to assembly the Sol genome, and dissecting Sol evo
  ☆19Updated 2 years ago
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆44Updated last year
• liushoucheng / SPART
  a Semi-automated pipeline for assembling T2T genome
  ☆24Updated last month
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆40Updated 2 years ago
• simon19891216 / CentIER
  ☆40Updated 4 months ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆37Updated 3 years ago
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆52Updated 7 years ago
• rivasiker / autocoalhmm
  Automated pipeline for running CoalHMM
  ☆13Updated 2 years ago
• hewm2008 / VCF2Dis
  VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files
  ☆50Updated 3 months ago
• Dee-chen / Tree2gd
  ☆45Updated 3 years ago
• therkildsen-lab / lcwgs-simulation
  ☆17Updated 3 years ago
• dongyawu / PangenomeEvolution
  scripts used in Rice Pangenome Projects (Evolution).
  ☆13Updated 2 years ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆50Updated 5 months ago
• millanek / tutorials
  Tutorials on phylogenetic and phylogenomic inference
  ☆49Updated 7 months ago
• zhangrengang / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆24Updated 9 months ago
• HuffordLab / Wang_et_al._Demography
  Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"
  ☆17Updated 5 years ago
• wangzihell / IntroBlocker
  The IntroBlocker ancestry inference algorithm
  ☆17Updated 2 years ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆48Updated 6 months ago
• wlz0726 / Population_Genomics_Scripts
  Scripts of population genomics analysis
  ☆36Updated 7 years ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆44Updated 6 years ago
• heche-psb / wgd
  wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
  ☆37Updated 9 months ago
• popgenome / lettuce2020
  Codes for the lettuce resequencing project in 2020
  ☆31Updated 4 years ago