CellMigrationLab / CellTracksColab
A platform for compiling, analyzing, and exploring tracking data
☆43Updated last week
Alternatives and similar repositories for CellTracksColab:
Users that are interested in CellTracksColab are comparing it to the libraries listed below
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated 5 months ago
- Guides and code for 3D nuclear instance segmentation☆21Updated last week
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆15Updated last week
- Lectures for a napari training course☆50Updated last year
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆22Updated 3 years ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 3 months ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆75Updated 2 weeks ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆36Updated 3 weeks ago
- ☆38Updated 7 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 4 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆41Updated 4 months ago
- ☆47Updated 5 months ago
- A napari plugin for clustering objects according to their properties.☆82Updated this week
- ☆15Updated 7 months ago
- ImageJ macros to run Cellpose from Fiji (using the plugin from BIOP-EPFL) and to match nuclei and cell body label maps.☆14Updated last week
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 4 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 5 months ago
- StarDist plugin for napari☆37Updated 6 months ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆62Updated last year
- Track and lineage visualization with btrack and Napari☆45Updated 4 months ago
- Interactive visualization and sharing of cell tracking data in the browser☆23Updated this week
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆59Updated 2 weeks ago
- MethodsJ2☆14Updated 2 years ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆25Updated 9 months ago
- ☆19Updated 3 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 3 months ago
- StarDist plugin for ImageJ☆28Updated 2 years ago
- Cell tracking and segmentation software☆106Updated last week
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆78Updated last week