CellMigrationLab / CellTracksColabLinks
A platform for compiling, analyzing, and exploring tracking data
☆47Updated 4 months ago
Alternatives and similar repositories for CellTracksColab
Users that are interested in CellTracksColab are comparing it to the libraries listed below
Sorting:
- Imagej toolset to ease hyperstacks visualization and handling☆23Updated last year
- Guides and code for 3D nuclear instance segmentation☆22Updated 3 weeks ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆17Updated last month
- Lectures for a napari training course☆51Updated 2 years ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆83Updated last month
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated 3 weeks ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Updated 2 months ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆40Updated last week
- A napari plugin for clustering objects according to their properties.☆88Updated this week
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆39Updated last year
- ☆51Updated 7 months ago
- ImageJ macros to run Cellpose from Fiji (using the plugin from BIOP-EPFL) and to match nuclei and cell body label maps.☆17Updated 9 months ago
- StarDist plugin for napari☆38Updated last year
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆85Updated 3 weeks ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 8 months ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- ☆16Updated last year
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆89Updated 3 weeks ago
- MethodsJ2☆14Updated 3 years ago
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆26Updated last year
- ☆13Updated last month
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- Generate markdown notebooks from ImageJ Macro☆26Updated 4 years ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Updated last year
- Accurate and efficient spot detection for microscopy data☆113Updated 3 weeks ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆151Updated 2 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆97Updated 2 weeks ago