miura / reproducible_bioimage_analysisLinks
☆14Updated 4 years ago
Alternatives and similar repositories for reproducible_bioimage_analysis
Users that are interested in reproducible_bioimage_analysis are comparing it to the libraries listed below
Sorting:
- Microsopic Image Analyzer (MIA)☆28Updated 3 months ago
- BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆24Updated this week
- An Ilastik-like interactive pixel classifier.☆16Updated last year
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆17Updated this week
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆26Updated last year
- A platform for compiling, analyzing, and exploring tracking data☆47Updated 3 months ago
- Commands and Classes for interfacing between Imaris and Fiji☆13Updated last year
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆24Updated this week
- ExTrack MLE for diffusive noisy single-particle tracks☆14Updated 2 months ago
- Collection of useful (to me) python scripts for interacting with napari☆11Updated 3 years ago
- StarDist plugin for napari☆38Updated last year
- ☆20Updated 4 years ago
- Lectures for a napari training course☆51Updated 2 years ago
- ☆22Updated 2 years ago
- ☆23Updated 2 months ago
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆30Updated 7 months ago
- MethodsJ2☆14Updated 3 years ago
- Online documentation and reference for CLIJ☆28Updated 4 years ago
- some useful function to get Label from ROIs and vice versa , and more!☆11Updated 2 years ago
- Visualizing feature measurements on label images in napari☆10Updated last year
- Reference implementation of the Graph Exchange File Format☆28Updated this week
- Guides and code for 3D nuclear instance segmentation☆22Updated 5 months ago
- Lab for quantitative bioimage analysis experiments in Python☆17Updated last month
- A minimal dependency napari plugin giving access to scikit-image functions☆23Updated 2 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated last week
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Updated last month
- ☆39Updated last year
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆39Updated last year
- Tool for segmentation in bioimaging☆34Updated this week