miura / reproducible_bioimage_analysis
☆14Updated 4 years ago
Alternatives and similar repositories for reproducible_bioimage_analysis:
Users that are interested in reproducible_bioimage_analysis are comparing it to the libraries listed below
- An Ilastik-like interactive pixel classifier.☆16Updated 5 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆41Updated 3 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆22Updated 3 years ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆15Updated 2 weeks ago
- ☆10Updated 6 months ago
- ☆21Updated last year
- MethodsJ2☆14Updated 2 years ago
- Visualizing feature measurements on label images in napari☆10Updated 6 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 2 months ago
- ExTrack MLE for diffusive noisy single-particle tracks☆12Updated last month
- A minimal dependency napari plugin giving access to scikit-image functions☆17Updated 5 months ago
- A platform for compiling, analyzing, and exploring tracking data☆43Updated last month
- Commands and Classes for interfacing between Imaris and Fiji☆12Updated 4 months ago
- Microsopic Image Analyzer (MIA)☆29Updated 10 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 2 months ago
- Guides and code for 3D nuclear instance segmentation☆20Updated last month
- Materials for the "ImageJ/Fiji Level 2: Automation and batch processing using macros" course taught at the Wolfson Bioimaging Facility, U…☆12Updated 3 years ago
- ☆29Updated 10 months ago
- Process and analyze surfaces using vedo in napari.☆24Updated 9 months ago
- ☆17Updated 2 years ago
- ☆20Updated last year
- ☆46Updated 4 months ago
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆24Updated 4 months ago
- StarDist plugin for napari☆37Updated 5 months ago
- ilastik plugin for napari☆14Updated 10 months ago
- Process images using SimpleITK in napari☆20Updated 4 months ago
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆24Updated 2 weeks ago
- The repository of NEUBIAS textbook 2021☆10Updated 3 years ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last year
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated this week