Endesfelder-Lab / SMLMComputationalLinks
Code and data belonging to "Raw data to results: a hands-on introduction and overview of computational analysis for single-molecule localization microscopy", Martens et al., (2022), Frontiers in Bioinformatics (https://www.frontiersin.org/articles/10.3389/fbinf.2021.817254).
☆11Updated 3 years ago
Alternatives and similar repositories for SMLMComputational
Users that are interested in SMLMComputational are comparing it to the libraries listed below
Sorting:
- Adaptive Optics plugin for MicroManager☆12Updated 3 years ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 2 months ago
- MSSR Plugin☆13Updated 7 months ago
- Musical for ImageJ☆10Updated last year
- A napari plugin to analysis point spread functions.☆13Updated 3 months ago
- ☆10Updated 6 months ago
- napari plugin for trackastra☆13Updated 8 months ago
- CUDA-accelerated reconstruction for 3D-structured-illumination☆9Updated 11 months ago
- [DEPREACATED] Python interface for data-driven microscopy with Micro-manager/Micro-Magellan☆14Updated 5 years ago
- Little OBjects Segmentation and Tracking EnviRonment☆9Updated 4 years ago
- Image acquisition software for mesoSPIM light-sheet microscopes.☆42Updated 2 weeks ago
- GDSC Single Molecule Light Microscopy ImageJ Plugins☆16Updated this week
- Various parts made for fluorescence microscopy + optics work☆16Updated 5 years ago
- ☆11Updated this week
- Repo for discussing a unified effort towards a pymmcore-plus gui.☆13Updated this week
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆27Updated last month
- ☆20Updated 3 weeks ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 2 months ago
- Fluorescence Lifetime Ultimate Explorer (FLUTE) is a GUI for exploring and analyzing Fluorescence Lifetime Microscopy (FLIM) data☆27Updated 6 months ago
- Lattice light-sheet post-processing utility.☆29Updated 3 weeks ago
- Drift estimation☆15Updated last year
- Recipes for open microscopy☆12Updated 4 years ago
- ☆15Updated last year
- ☆12Updated last month
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- Python bindings for scalar and vectorial models of the 3D microscope point spread function.☆49Updated last year
- ☆14Updated 5 months ago
- 2D and 3D image deconvolution with python☆13Updated 9 months ago
- A collection of demonstration materials for MorphoLibJ.☆12Updated 2 years ago