BIOP / ijp-LaRoMe
some useful function to get Label from ROIs and vice versa , and more!
☆12Updated last year
Related projects ⓘ
Alternatives and complementary repositories for ijp-LaRoMe
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆12Updated last week
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆21Updated 3 years ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated last month
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 3 months ago
- MultiModal Big Image Data Sharing and Exploration☆14Updated last year
- Visualizing feature measurements on label images in napari☆10Updated 4 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆15Updated last week
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆16Updated 7 years ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆23Updated last week
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated last year
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated this week
- ☆13Updated 4 years ago
- A Board Game to teach co-localization analysis☆12Updated 3 weeks ago
- ☆12Updated 4 years ago
- ☆10Updated 3 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆37Updated last month
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated last month
- Control, reconstruction, and analysis code for oblique plane microscopy.☆21Updated 3 months ago
- Main tasks for the Fractal analytics platform☆14Updated this week
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 3 weeks ago
- Little OBjects Segmentation and Tracking EnviRonment☆9Updated 4 years ago
- ☆15Updated 2 years ago
- Browse your OMERO database from within napari.☆33Updated 2 weeks ago
- ☆21Updated 2 months ago
- Guides and code for 3D nuclear instance segmentation☆19Updated this week
- GDSC Single Molecule Light Microscopy ImageJ Plugins☆15Updated this week
- Running compute-intense parts of BigStitcher distributed☆20Updated 2 weeks ago
- ☆29Updated 8 months ago
- Process and analyze surfaces using vedo in napari.☆23Updated 6 months ago