BIOP / ijp-LaRoMeLinks
some useful function to get Label from ROIs and vice versa , and more!
☆12Updated 2 years ago
Alternatives and similar repositories for ijp-LaRoMe
Users that are interested in ijp-LaRoMe are comparing it to the libraries listed below
Sorting:
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated 2 years ago
- python tools for BigDataViewer☆22Updated 8 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 3 years ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 4 months ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆17Updated 2 weeks ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated last month
- ☆13Updated 5 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 9 months ago
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆16Updated 4 months ago
- Visualizing feature measurements on label images in napari☆10Updated last year
- Running compute-intense parts of BigStitcher distributed☆26Updated last week
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆28Updated 3 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆78Updated 2 weeks ago
- A minimal dependency napari plugin giving access to scikit-image functions☆18Updated 2 weeks ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 4 months ago
- ☆51Updated 3 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated last month
- Process images using SimpleITK in napari☆21Updated 3 months ago
- Browse your OMERO database from within napari.☆38Updated 3 weeks ago
- MultiModal Big Image Data Sharing and Exploration☆16Updated 2 years ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 11 months ago
- ☆13Updated 5 years ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆16Updated 4 months ago
- GDSC Single Molecule Light Microscopy ImageJ Plugins☆16Updated this week
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated last month
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Updated 7 years ago
- ☆11Updated last week
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated 10 months ago
- Materials for the "ImageJ/Fiji Level 2: Automation and batch processing using macros" course taught at the Wolfson Bioimaging Facility, U…☆13Updated 3 years ago