weigertlab / trackastraLinks
Transformer-based cell tracking for live-cell microscopy
☆73Updated last week
Alternatives and similar repositories for trackastra
Users that are interested in trackastra are comparing it to the libraries listed below
Sorting:
- Multi-Object Tracker using Integer Linear Equations☆32Updated 2 months ago
- StarDist plugin for napari☆38Updated 10 months ago
- Time arrow prediction for live-cell microscopy☆18Updated last year
- ☆23Updated last month
- Cell tracking and segmentation software☆117Updated this week
- ☆38Updated 3 weeks ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆27Updated last month
- A napari plugin for clustering objects according to their properties.☆87Updated this week
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- ☆81Updated 3 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 8 months ago
- Automated mitochondrial segmentation and tracking.☆32Updated 3 years ago
- ☆10Updated last year
- Panoptic segmentation algorithms for 2D and 3D electron microscopy images☆2Updated 2 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 7 months ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated 2 years ago
- Accurate and efficient spot detection for microscopy data☆88Updated this week
- ☆14Updated this week
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆74Updated this week
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 4 months ago
- Course and exercises on deep learning for microscopy image analysis☆18Updated last week
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆80Updated 2 months ago
- ☆50Updated last month
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated this week
- Python libraries for loading, running and packaging bioimage.io models☆31Updated last month
- Image reading, metadata management, and image writing for Microscopy images in Python☆88Updated this week
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated 4 months ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆17Updated last month
- Utils and convenience functions for large-scale bio-image analysis.☆56Updated last week
- Particle tracking by solving linear assignment problem.☆52Updated 3 weeks ago