Transformer-based cell tracking for live-cell microscopy
☆154Sep 11, 2026Updated last week
Alternatives and similar repositories for trackastra
Users that are interested in trackastra are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cell tracking and segmentation software☆209Aug 13, 2026Updated last month
- Reference implementation of the Graph Exchange File Format☆42Sep 7, 2026Updated 2 weeks ago
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Updated this week
- Accurate and efficient spot detection for microscopy data☆143Jun 8, 2026Updated 3 months ago
- Modern Bio-Formats wrapper with clean lazy Python API☆23Jun 25, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Interactive visualization and sharing of cell tracking data in the browser☆48Aug 24, 2026Updated 3 weeks ago
- Utilities for computing common accuracy metrics on cell tracking solutions with ground truth☆41Sep 10, 2026Updated last week
- napari plugin for trackastra☆19Jul 16, 2026Updated 2 months ago
- Multi-Object Tracking with Integer Linear Equations☆41Jul 21, 2026Updated 2 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆132Updated this week
- Official implementation of MuViT (CVPR 2026), a ViT-based architecture for multi-scale modelling of gigapixel microscopy images.☆48Jun 7, 2026Updated 3 months ago
- Time arrow prediction for live-cell microscopy☆22Jun 17, 2024Updated 2 years ago
- ☆27Sep 11, 2026Updated last week
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆52Sep 7, 2026Updated 2 weeks ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Source materials for a textbook on AI in Microscopy☆16Updated this week
- Deep-learning library for image restoration.☆152Updated this week
- Python libraries for loading, running and packaging bioimage.io models☆40Updated this week
- Light microscopy simulation in python.☆55Sep 7, 2026Updated 2 weeks ago
- A Python toolbox for aligning / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆134Sep 6, 2026Updated 2 weeks ago
- ☆39Sep 11, 2026Updated last week
- GPU-accelerated Image Processing library for Python☆65Updated this week
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆202Updated this week
- Segment Anything for Microscopy☆723Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆99Sep 8, 2026Updated last week
- Rust extension module for FIJI-like colormapping and channel blending☆21Jun 24, 2026Updated 2 months ago
- A python package for fitting splines.☆24Jul 27, 2026Updated last month
- Particle tracking by solving linear assignment problem.☆69Jul 30, 2026Updated last month
- Block-wise operations for large nD volumes☆45Updated this week
- A minimal dependency napari plugin giving access to scikit-image functions☆23Sep 4, 2026Updated 2 weeks ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆31May 1, 2025Updated last year
- TrackMate is your buddy for your everyday tracking.☆241Aug 28, 2026Updated 3 weeks ago
- Track and lineage visualization with btrack and Napari☆46Sep 29, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Jul 26, 2026Updated last month
- A napari plugin for zarr backed OME-NGFF images☆54Aug 31, 2026Updated 3 weeks ago
- a generalist algorithm for cellular segmentation with human-in-the-loop capabilities☆2,369Jun 14, 2026Updated 3 months ago
- ☆243Jul 30, 2026Updated last month
- Segment images utilizing pre-trained neural networks as feature extractors☆52Jul 3, 2026Updated 2 months ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Apr 30, 2023Updated 3 years ago
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆128Updated this week