Transformer-based cell tracking for live-cell microscopy
☆130Mar 31, 2026Updated last month
Alternatives and similar repositories for trackastra
Users that are interested in trackastra are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cell tracking and segmentation software☆177May 14, 2026Updated last week
- napari plugin for trackastra☆18Nov 12, 2025Updated 6 months ago
- Time arrow prediction for live-cell microscopy☆22Jun 17, 2024Updated last year
- Multi-Object Tracking with Integer Linear Equations☆38May 7, 2026Updated 2 weeks ago
- A platform for compiling, analyzing, and exploring tracking data☆50Feb 2, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆38Apr 29, 2026Updated 3 weeks ago
- Rust extension module for FIJI-like colormapping and channel blending☆21Mar 31, 2026Updated last month
- Interactive surface analysis in napari for bio-mechanical stress measurement☆18Updated this week
- Interactive visualization and sharing of cell tracking data in the browser☆48Apr 21, 2026Updated last month
- Particle tracking by solving linear assignment problem.☆64May 8, 2026Updated 2 weeks ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆95May 15, 2026Updated last week
- Segment Anything for Microscopy☆683Updated this week
- Python libraries for loading, running and packaging bioimage.io models☆38Updated this week
- Segment Anything for Medical Imaging☆31Mar 11, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆41Apr 21, 2025Updated last year
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Apr 20, 2026Updated last month
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆196Updated this week
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆60Jun 30, 2025Updated 10 months ago
- Affinity based segmentation algorithms and tools☆10May 12, 2025Updated last year
- StarDist plugin for napari☆39Aug 24, 2024Updated last year
- Accurate and efficient spot detection for microscopy data☆125Feb 5, 2026Updated 3 months ago
- Deep-learning library for image restoration.☆136Updated this week
- Reader, analyzer, and viewer of MINFLUX raw data.☆13May 15, 2026Updated last week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 5 months ago
- ☆21Jan 19, 2023Updated 3 years ago
- Block-wise operations for large nD volumes☆45May 12, 2026Updated last week
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13May 12, 2026Updated last week
- Evaluating the quality of a cell segmentation method without reference.☆13Jul 26, 2025Updated 9 months ago
- Bayesian multi-object tracking☆333Apr 1, 2026Updated last month
- Image reading, metadata management, and image writing for Microscopy images in Python☆124May 1, 2026Updated 3 weeks ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆47Dec 4, 2025Updated 5 months ago
- A python package for fitting splines.☆23May 8, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A python algorithm for tracking cells in 3D deforming organs☆69Nov 13, 2025Updated 6 months ago
- SpotMAX: a generalist framework for multi-dimensional automatic spot detection and quantification☆14Updated this week
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆46May 1, 2025Updated last year
- Optimize image processing workflows in napari☆17May 1, 2025Updated last year
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆119Mar 9, 2026Updated 2 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Apr 23, 2026Updated last month
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆86Mar 28, 2026Updated last month