Alternatives and similar repositories for trackastra

Users that are interested in trackastra are comparing it to the libraries listed below

• royerlab / ultrack
  Cell tracking and segmentation software
  ☆159Updated last week
• stardist / stardist-napari
  StarDist plugin for napari
  ☆38Updated last year
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆58Updated 4 months ago
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆87Updated last week
• multiview-stitcher / multiview-stitcher
  A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.
  ☆95Updated this week
• HenriquesLab / NanoPyx
  Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging
  ☆88Updated last week
• weigertlab / spotiflow
  Accurate and efficient spot detection for microscopy data
  ☆111Updated last week
• DanuserLab / u-segment3D
  Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…
  ☆43Updated 2 weeks ago
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆82Updated 2 weeks ago
• funkelab / motile
  Multi-Object Tracker using Integer Linear Equations
  ☆38Updated 2 weeks ago
• fractal-napari-plugins-collection / napari-feature-classifier
  ☆22Updated 5 months ago
• computational-cell-analytics / dl-for-micro
  Course and exercises on deep learning for microscopy image analysis
  ☆21Updated 2 weeks ago
• haesleinhuepf / devbio-napari
  ☆51Updated 7 months ago
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆61Updated last year
• weigertlab / napari-trackastra
  napari plugin for trackastra
  ☆17Updated 3 weeks ago
• napari / napari-plugin-template
  A template repo used to make new napari plugins
  ☆29Updated this week
• yfukai / laptrack
  Particle tracking by solving linear assignment problem.
  ☆60Updated last week
• haesleinhuepf / napari-segment-blobs-and-things-with-membranes
  A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…
  ☆30Updated 7 months ago
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆39Updated last month
• weigertlab / tarrow
  Time arrow prediction for live-cell microscopy
  ☆20Updated last year
• tlambert03 / microsim
  ☆42Updated last week
• fmi-basel / LSTree
  LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.
  ☆20Updated 2 years ago
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆58Updated 4 months ago
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆69Updated last year
• UU-cellbiology / BigTrace
  FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
  ☆29Updated last week
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆27Updated 9 months ago
• haesleinhuepf / stackview
  Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets
  ☆174Updated 6 months ago
• NEUBIAS / Defragmentation_TrainingSchool_EOSC-Life_2022
  "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…
  ☆15Updated 2 years ago
• aelefebv / nellie
  Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
  ☆86Updated this week
• WenChentao / 3DeeCellTracker
  A python algorithm for tracking cells in 3D deforming organs
  ☆65Updated 3 weeks ago