Transformer-based cell tracking for live-cell microscopy
☆124Feb 1, 2026Updated last month
Alternatives and similar repositories for trackastra
Users that are interested in trackastra are comparing it to the libraries listed below
Sorting:
- Cell tracking and segmentation software☆173Feb 11, 2026Updated 2 weeks ago
- napari plugin for trackastra☆17Nov 12, 2025Updated 3 months ago
- Time arrow prediction for live-cell microscopy☆21Jun 17, 2024Updated last year
- Interactive surface analysis in napari for bio-mechanical stress measurement☆18Feb 23, 2026Updated last week
- Multi-Object Tracker using Integer Linear Equations☆38Dec 18, 2025Updated 2 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Jul 7, 2025Updated 7 months ago
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 3 months ago
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆60Jun 30, 2025Updated 8 months ago
- Particle tracking by solving linear assignment problem.☆62Feb 20, 2026Updated last week
- Segment Anything for Microscopy☆652Updated this week
- A platform for compiling, analyzing, and exploring tracking data☆48Feb 2, 2026Updated last month
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆192Feb 23, 2026Updated last week
- Image reading, metadata management, and image writing for Microscopy images in Python☆114Dec 22, 2025Updated 2 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45May 1, 2025Updated 10 months ago
- Block-wise operations for large nD volumes☆45Updated this week
- ☆38Dec 5, 2025Updated 2 months ago
- Optimize image processing workflows in napari☆17May 1, 2025Updated 10 months ago
- Rust extension module for FIJI-like colormapping and channel blending☆19Feb 9, 2026Updated 3 weeks ago
- Evaluating the quality of a cell segmentation method without reference.☆13Jul 26, 2025Updated 7 months ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆88Jan 14, 2026Updated last month
- Block-wise task scheduling for large nD volumes.☆33Mar 28, 2025Updated 11 months ago
- Accurate and efficient spot detection for microscopy data☆117Feb 5, 2026Updated 3 weeks ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Apr 21, 2025Updated 10 months ago
- Affinity based segmentation algorithms and tools☆10May 12, 2025Updated 9 months ago
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Dec 1, 2025Updated 3 months ago
- A python package for fitting splines.☆23Feb 23, 2026Updated last week
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated 7 months ago
- A python algorithm for tracking cells in 3D deforming organs☆68Nov 13, 2025Updated 3 months ago
- Python libraries for loading, running and packaging bioimage.io models☆35Feb 19, 2026Updated last week
- ☆22Jun 27, 2025Updated 8 months ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆16Nov 10, 2022Updated 3 years ago
- StarDist plugin for napari☆38Aug 24, 2024Updated last year
- A deep-learning library for denoising images using Noise2Void and friends (CARE, PN2V, HDN etc.), with a focus on user-experience and doc…☆122Updated this week
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆49Updated this week
- Linking napari layers with Matplotlib plots☆43Feb 2, 2026Updated last month
- Bayesian multi-object tracking☆331Jan 9, 2026Updated last month
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆238Feb 21, 2025Updated last year
- Interactive visualization and sharing of cell tracking data in the browser☆46Updated this week
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Dec 4, 2025Updated 2 months ago