weigertlab / trackastraLinks
Transformer-based cell tracking for live-cell microscopy
☆119Updated 2 weeks ago
Alternatives and similar repositories for trackastra
Users that are interested in trackastra are comparing it to the libraries listed below
Sorting:
- StarDist plugin for napari☆38Updated last year
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆83Updated last month
- Utils and convenience functions for large-scale bio-image analysis.☆58Updated 2 weeks ago
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆48Updated 2 weeks ago
- Cell tracking and segmentation software☆162Updated 2 weeks ago
- Course and exercises on deep learning for microscopy image analysis☆21Updated last month
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 7 months ago
- A napari plugin for clustering objects according to their properties.☆88Updated last week
- Multi-Object Tracker using Integer Linear Equations☆38Updated last week
- Accurate and efficient spot detection for microscopy data☆113Updated 3 weeks ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆89Updated 3 weeks ago
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆83Updated last month
- A template repo used to make new napari plugins☆30Updated 3 weeks ago
- Time arrow prediction for live-cell microscopy☆21Updated last year
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆27Updated 10 months ago
- ☆51Updated 7 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- Multiple file format reading directly into napari using pure Python☆39Updated 2 months ago
- Particle tracking by solving linear assignment problem.☆61Updated 3 weeks ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆99Updated last week
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45Updated 7 months ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Updated last year
- Image reading, metadata management, and image writing for Microscopy images in Python☆110Updated last week
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆20Updated 2 years ago
- ☆22Updated 6 months ago
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆60Updated 6 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last month
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆85Updated 3 weeks ago
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 5 months ago
- GPU-accelerated general purpose image processing and image analysis in napari☆36Updated 7 months ago