Transformer-based cell tracking for live-cell microscopy
☆125Feb 1, 2026Updated last month
Alternatives and similar repositories for trackastra
Users that are interested in trackastra are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cell tracking and segmentation software☆174Updated this week
- napari plugin for trackastra☆17Nov 12, 2025Updated 4 months ago
- Time arrow prediction for live-cell microscopy☆21Jun 17, 2024Updated last year
- Multi-Object Tracker using Integer Linear Equations☆38Dec 18, 2025Updated 3 months ago
- A platform for compiling, analyzing, and exploring tracking data☆49Feb 2, 2026Updated last month
- ☆38Mar 9, 2026Updated 2 weeks ago
- Rust extension module for FIJI-like colormapping and channel blending☆19Feb 9, 2026Updated last month
- Interactive surface analysis in napari for bio-mechanical stress measurement☆18Mar 16, 2026Updated last week
- Interactive visualization and sharing of cell tracking data in the browser☆46Mar 4, 2026Updated 2 weeks ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆90Jan 14, 2026Updated 2 months ago
- Particle tracking by solving linear assignment problem.☆63Mar 6, 2026Updated 2 weeks ago
- Segment Anything for Microscopy☆663Updated this week
- Python libraries for loading, running and packaging bioimage.io models☆35Updated this week
- Segment Anything for Medical Imaging☆28Mar 11, 2026Updated last week
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Apr 21, 2025Updated 11 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Mar 4, 2026Updated 2 weeks ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆193Updated this week
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆60Jun 30, 2025Updated 8 months ago
- Accurate and efficient spot detection for microscopy data☆117Feb 5, 2026Updated last month
- Affinity based segmentation algorithms and tools☆10May 12, 2025Updated 10 months ago
- StarDist plugin for napari☆39Aug 24, 2024Updated last year
- A deep-learning library for denoising images using Noise2Void and friends (CARE, PN2V, HDN etc.), with a focus on user-experience and doc…☆125Updated this week
- ☆21Jan 19, 2023Updated 3 years ago
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 3 months ago
- Block-wise operations for large nD volumes☆45Updated this week
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Dec 1, 2025Updated 3 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆117Mar 13, 2026Updated last week
- Evaluating the quality of a cell segmentation method without reference.☆13Jul 26, 2025Updated 7 months ago
- Bayesian multi-object tracking☆331Jan 9, 2026Updated 2 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Dec 4, 2025Updated 3 months ago
- A python algorithm for tracking cells in 3D deforming organs☆69Nov 13, 2025Updated 4 months ago
- A python package for fitting splines.☆23Mar 3, 2026Updated 2 weeks ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45May 1, 2025Updated 10 months ago
- SpotMAX: a generalist framework for multi-dimensional automatic spot detection and quantification☆14Mar 13, 2026Updated last week
- Optimize image processing workflows in napari☆17May 1, 2025Updated 10 months ago
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆119Mar 9, 2026Updated 2 weeks ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Mar 11, 2026Updated last week
- GPU-accelerated Image Processing library for Python☆55Updated this week
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆85Updated this week