Alternatives and similar repositories for EzColocalization

Users that are interested in EzColocalization are comparing it to the libraries listed below

• fish-quant / big-fish
  Toolbox for the analysis of smFISH images.
  ☆68Updated last year
• CellProfiler / tutorials
  CellProfiler tutorial pipelines and images
  ☆94Updated 2 months ago
• ZhuangLab / MERFISH_analysis
  Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.
  ☆50Updated 4 years ago
• elgw / deconwolf
  Deconvolution of widefield microscopy images and generation of point spread functions
  ☆52Updated last week
• WhoIsJack / python-bioimage-analysis-tutorial
  A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.
  ☆98Updated 2 years ago
• Michael-shannon / cellPLATO
  The 2025 version of cellPLATO
  ☆15Updated 2 weeks ago
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆35Updated 10 months ago
• quantixed / imagej-macros
  quantixed FIJI update site
  ☆16Updated last week
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆38Updated 2 weeks ago
• PreibischLab / RS-FISH
  Tool for precise, interactive, fast and scalable FISH spot detection
  ☆50Updated 8 months ago
• beliveau-lab / PaintSHOP_pipeline
  A scalable machine learning pipeline for probe specificity prediction.
  ☆14Updated last year
• guiwitz / neubias_academy_biapy
  NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter
  ☆63Updated 2 years ago
• OakesLab / AFT-Alignment_by_Fourier_Transform
  ☆15Updated last year
• kwolbachia / Visualization_toolset
  Imagej toolset to ease hyperstacks visualization and handling
  ☆22Updated 11 months ago
• MontpellierRessourcesImagerie / imagej_macros_and_scripts
  ImageJ macros and scripts written at the imaging facility MRI
  ☆35Updated this week
• CellMigrationLab / CellTracksColab
  A platform for compiling, analyzing, and exploring tracking data
  ☆47Updated last month
• quantixed / TrackMateR
  Analysis of TrackMate XML outputs in R
  ☆14Updated 3 weeks ago
• BiAPoL / Bio-image_Analysis_with_Python
  Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…
  ☆227Updated 2 years ago
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆67Updated last week
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆81Updated 3 weeks ago
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆99Updated 3 months ago
• fish-quant / big-fish-examples
  Notebooks to illustrate how BigFISH is working.
  ☆11Updated 3 years ago
• CellProfiler / CellProfiler-plugins
  Community-contributed and experimental CellProfiler modules.
  ☆68Updated this week
• labsyspharm / mcmicro
  Multiple-choice microscopy pipeline
  ☆135Updated last week
• MannLabs / scPortrait
  scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images
  ☆89Updated 2 weeks ago
• AhsenChaudhry / Mitochondria-Analyzer
  Mitochondria Analyzer
  ☆22Updated 2 years ago
• RMS-DAIM / Python-for-Bioimage-Analysis
  This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…
  ☆135Updated 5 years ago
• yuqiyuqitan / SPACEc
  ☆49Updated 3 months ago
• angelolab / ark-analysis
  Integrated pipeline for multiplexed image analysis
  ☆96Updated 6 months ago
• sofroniewn / napari-training-course
  Lectures for a napari training course
  ☆50Updated 2 years ago