royerlab / inTRACKtiveLinks
Interactive visualization and sharing of cell tracking data in the browser
☆45Updated last month
Alternatives and similar repositories for inTRACKtive
Users that are interested in inTRACKtive are comparing it to the libraries listed below
Sorting:
- Whole slide image registration through wsireg in napari.☆12Updated 2 years ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated 2 months ago
- Accurate and efficient spot detection for microscopy data☆117Updated last week
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- Interactive visualization of spatial omics data☆75Updated last week
- An introduction to OME-Zarr for big bioimaging data☆24Updated this week
- Deconvolution of widefield microscopy images and generation of point spread functions☆58Updated last month
- Command-line client for Fractal☆48Updated this week
- Image registration (alignment) software for large microscopy images☆27Updated 2 years ago
- A plugin to visualise 3D spatial single cell omics☆20Updated 3 months ago
- A platform for compiling, analyzing, and exploring tracking data☆48Updated last week
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Updated last year
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆40Updated last month
- ☆13Updated 2 months ago
- A napari plugin for clustering objects according to their properties.☆90Updated 2 weeks ago
- Python API and Jupyter widget for Vitessce☆61Updated this week
- Track and lineage visualization with btrack and Napari☆45Updated 4 months ago
- Raw format to OME-TIFF converter☆56Updated 3 weeks ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆26Updated last week
- Multiple file format reading directly into napari using pure Python☆39Updated 3 months ago
- GIve easy, high-level access to ome-zarr fileset☆22Updated 4 months ago
- The 2025 version of cellPLATO☆15Updated 2 weeks ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 2 months ago
- StarDist plugin for napari☆38Updated last year
- ☆12Updated last year
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 3 months ago
- ☆51Updated 9 months ago
- ☆13Updated 3 weeks ago
- Visualizing feature measurements on label images in napari☆10Updated last year