royerlab / inTRACKtiveLinks
Interactive visualization and sharing of cell tracking data in the browser
☆44Updated this week
Alternatives and similar repositories for inTRACKtive
Users that are interested in inTRACKtive are comparing it to the libraries listed below
Sorting:
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated last week
- A platform for compiling, analyzing, and exploring tracking data☆47Updated 3 months ago
- Image registration (alignment) software for large microscopy images☆26Updated 2 years ago
- Whole slide image registration through wsireg in napari.☆12Updated 2 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆39Updated last week
- A plugin to visualise 3D spatial single cell omics☆20Updated last month
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- An introduction to OME-Zarr for big bioimaging data☆22Updated this week
- GIve easy, high-level access to ome-zarr fileset☆22Updated 2 months ago
- Command-line client for Fractal☆47Updated last week
- Interactive visualization of spatial omics data☆73Updated last week
- Accurate and efficient spot detection for microscopy data☆111Updated last week
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- Deconvolution of widefield microscopy images and generation of point spread functions☆55Updated last week
- Guides and code for 3D nuclear instance segmentation☆22Updated last week
- Raw format to OME-TIFF converter☆56Updated 2 weeks ago
- ☆13Updated 2 weeks ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Updated 10 months ago
- ☆91Updated last month
- ☆51Updated 7 months ago
- Multiple file format reading directly into napari using pure Python☆39Updated last month
- ☆12Updated this week
- Track and lineage visualization with btrack and Napari☆45Updated 2 months ago
- Lectures for a napari training course☆51Updated 2 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated last week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- ☆12Updated last year
- Visualizing feature measurements on label images in napari☆10Updated last year