royerlab / inTRACKtive
Interactive visualization and sharing of cell tracking data in the browser
☆23Updated this week
Alternatives and similar repositories for inTRACKtive:
Users that are interested in inTRACKtive are comparing it to the libraries listed below
- ☆47Updated 5 months ago
- Multiple file format reading directly into napari using pure Python☆35Updated 8 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆13Updated 3 weeks ago
- A platform for compiling, analyzing, and exploring tracking data☆43Updated 3 weeks ago
- Browse your OMERO database from within napari.☆36Updated last week
- ☆12Updated 10 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆22Updated 3 years ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆41Updated 2 weeks ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 4 months ago
- Guides and code for 3D nuclear instance segmentation☆21Updated 2 weeks ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated last month
- StarDist plugin for napari☆38Updated 7 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 4 months ago
- Accurate and efficient spot detection for microscopy data☆72Updated 3 weeks ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- ☆23Updated 6 months ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 4 months ago
- A napari plugin for clustering objects according to their properties.☆82Updated 2 weeks ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated 2 months ago
- ☆16Updated 8 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆25Updated 9 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆34Updated 4 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 6 months ago
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated 5 months ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆36Updated last month
- Visualizing feature measurements on label images in napari☆10Updated 8 months ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆16Updated 3 weeks ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated this week
- Track and lineage visualization with btrack and Napari☆45Updated 5 months ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year