ariel-waisman / LabelsToROIs
A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification
☆22Updated 3 years ago
Alternatives and similar repositories for LabelsToROIs:
Users that are interested in LabelsToROIs are comparing it to the libraries listed below
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated 5 months ago
- ☆13Updated 4 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 4 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 4 months ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆16Updated last month
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated last month
- Guides and code for 3D nuclear instance segmentation☆22Updated 3 weeks ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆44Updated this week
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 6 months ago
- Generate markdown notebooks from ImageJ Macro☆24Updated 4 years ago
- A platform for compiling, analyzing, and exploring tracking data☆43Updated last month
- ☆47Updated 5 months ago
- Process and analyze surfaces using vedo in napari.☆23Updated 11 months ago
- A napari plugin to analysis point spread functions.☆12Updated 2 weeks ago
- ☆23Updated 6 months ago
- ☆10Updated 2 weeks ago
- The repository of NEUBIAS textbook 2021☆10Updated 3 years ago
- Process images using SimpleITK in napari☆20Updated 6 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆14Updated this week
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 3 months ago
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated last month
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- Visualizing feature measurements on label images in napari☆10Updated 8 months ago
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- ☆16Updated 8 months ago
- Z-stack Depth Colorcode ImageJ FIJI plugin☆24Updated 4 years ago
- How to use Aligning Big Brains and Atlases with Python☆15Updated last year
- ☆17Updated 2 years ago
- Interactive visualization and sharing of cell tracking data in the browser☆23Updated 2 weeks ago