A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification
☆23Sep 11, 2021Updated 4 years ago
Alternatives and similar repositories for LabelsToROIs
Users that are interested in LabelsToROIs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- some useful function to get Label from ROIs and vice versa , and more!☆11May 3, 2023Updated 2 years ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 4 years ago
- ☆10Nov 29, 2024Updated last year
- MiC is an ImageJ plugin to compare segmentation masks☆19Jun 4, 2025Updated 10 months ago
- ☆13Apr 27, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ilastik plugin for napari☆15Mar 2, 2026Updated 2 months ago
- Imagej toolset to ease hyperstacks visualization and handling☆23Feb 9, 2026Updated 2 months ago
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆47Dec 4, 2025Updated 4 months ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆20Feb 10, 2026Updated 2 months ago
- Visualizing feature measurements on label images in napari☆10Jul 24, 2024Updated last year
- A Python module for accessing Hamamatsu DCIMG files☆14Jun 28, 2023Updated 2 years ago
- A curated list of awesome Janelia software☆17Feb 26, 2025Updated last year
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Nov 23, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆12Jan 10, 2021Updated 5 years ago
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆92Mar 24, 2026Updated last month
- ImageJ macros to run Cellpose from Fiji (using the plugin from BIOP-EPFL) and to match nuclei and cell body label maps.☆20Mar 11, 2025Updated last year
- A high content analysis method to study skeletal muscle☆12Apr 26, 2024Updated 2 years ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆136Apr 9, 2020Updated 6 years ago
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 2 years ago
- napari widgets for start-to-finish batch processing☆15Apr 1, 2026Updated last month
- ☆22Aug 17, 2023Updated 2 years ago
- The repository of NEUBIAS textbook 2021☆11Jan 24, 2022Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆39Jul 9, 2024Updated last year
- Detection of Molecules plugin for ImageJ: SMLM 2D/3D localizations, drift and chromatic aberration correction, etc☆15Nov 16, 2022Updated 3 years ago
- The Java library to run Deep Learning models☆34Updated this week
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆41Mar 26, 2026Updated last month
- GPU-accelerated image processing using CLIJ via pyimagej in python☆10Jan 8, 2021Updated 5 years ago
- RAPID: a Real-time, GPU-Accelerated Parallelized Image processing software for large-scale multiplexed fluorescence microscopy Data☆12Dec 3, 2022Updated 3 years ago
- Generate markdown notebooks from ImageJ Macro☆27Mar 17, 2021Updated 5 years ago
- Applying deep learning for very early recognition of pluripotent stem cell differentiation☆11Mar 15, 2019Updated 7 years ago
- Acquire bright field images along with the super resolution data and use it to track drift in 3D with nanometer precision!☆11Jun 22, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Computational workflows to assess phototoxicity in live-cell microscopy experiments☆11Sep 15, 2025Updated 7 months ago
- ☆21Updated this week
- ☆23Mar 26, 2021Updated 5 years ago
- simple package for augmentation of n-dimensional arrays☆34Aug 10, 2023Updated 2 years ago
- General Image Analysis of Nuclei-containing Images☆10Jul 11, 2025Updated 9 months ago
- Dimensionality reduction (UMAP, t-SNE, PCA) for ImageJ/Fiji☆12May 6, 2025Updated 11 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Oct 8, 2025Updated 6 months ago