ariel-waisman / LabelsToROIs
A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification
☆23Updated 3 years ago
Alternatives and similar repositories for LabelsToROIs:
Users that are interested in LabelsToROIs are comparing it to the libraries listed below
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 5 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated this week
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆16Updated this week
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated 6 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 2 weeks ago
- Running compute-intense parts of BigStitcher distributed☆26Updated 3 weeks ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated last week
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆37Updated 2 months ago
- ☆17Updated this week
- Guides and code for 3D nuclear instance segmentation☆22Updated last week
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 2 months ago
- Lectures for a napari training course☆50Updated last year
- Process images using SimpleITK in napari☆20Updated this week
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 7 months ago
- ☆49Updated this week
- ☆13Updated 5 years ago
- Z-stack Depth Colorcode ImageJ FIJI plugin☆24Updated 4 years ago
- StarDist plugin for napari☆38Updated 8 months ago
- ☆23Updated 2 weeks ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆14Updated last week
- A platform for compiling, analyzing, and exploring tracking data☆44Updated last month
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated 3 months ago
- Visualizing feature measurements on label images in napari☆10Updated 9 months ago
- ☆10Updated last month
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆44Updated last week
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- Automated mitochondrial segmentation and tracking.☆31Updated 3 years ago
- Process and analyze surfaces using vedo in napari.☆23Updated 11 months ago