A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification
☆23Sep 11, 2021Updated 4 years ago
Alternatives and similar repositories for LabelsToROIs
Users that are interested in LabelsToROIs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- some useful function to get Label from ROIs and vice versa , and more!☆11May 3, 2023Updated 3 years ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 5 years ago
- ☆10Nov 29, 2024Updated last year
- ☆13Apr 27, 2020Updated 6 years ago
- MiC is an ImageJ plugin to compare segmentation masks☆20Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ilastik plugin for napari☆15Mar 2, 2026Updated 4 months ago
- Imagej toolset to ease hyperstacks visualization and handling☆23Feb 9, 2026Updated 5 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆47Dec 4, 2025Updated 7 months ago
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆21Feb 10, 2026Updated 5 months ago
- Visualizing feature measurements on label images in napari☆10Jul 24, 2024Updated last year
- A Python module for accessing Hamamatsu DCIMG files☆14Jun 28, 2023Updated 3 years ago
- A curated list of awesome Janelia software☆17Feb 26, 2025Updated last year
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Nov 23, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆12Jan 10, 2021Updated 5 years ago
- ImageJ macros to run Cellpose from Fiji (using the plugin from BIOP-EPFL) and to match nuclei and cell body label maps.☆20Mar 11, 2025Updated last year
- Full Docs @ https://skalalab.github.io/flim_playground_doc/☆16Updated this week
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆136Apr 9, 2020Updated 6 years ago
- A high content analysis method to study skeletal muscle☆12Apr 26, 2024Updated 2 years ago
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 3 years ago
- napari widgets for start-to-finish batch processing☆15Jun 1, 2026Updated last month
- ☆22Aug 17, 2023Updated 2 years ago
- GPU-accelerated image processing in Matlab using CLIJ☆11Oct 30, 2021Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- The repository of NEUBIAS textbook 2021☆10Jan 24, 2022Updated 4 years ago
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆39Jul 9, 2024Updated 2 years ago
- Detection of Molecules plugin for ImageJ: SMLM 2D/3D localizations, drift and chromatic aberration correction, etc☆15Nov 16, 2022Updated 3 years ago
- VISION is a sophisticated software tool specifically designed to analyze and process biological and microscopic images.☆10Jul 25, 2024Updated last year
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆96Mar 24, 2026Updated 3 months ago
- GPU-accelerated image processing using CLIJ via pyimagej in python☆10Jan 8, 2021Updated 5 years ago
- The Java library to run Deep Learning models☆36Jul 15, 2026Updated last week
- Generate markdown notebooks from ImageJ Macro☆27Mar 17, 2021Updated 5 years ago
- ☆26Jun 3, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆41Jun 29, 2026Updated 3 weeks ago
- Applying deep learning for very early recognition of pluripotent stem cell differentiation☆11Mar 15, 2019Updated 7 years ago
- ☆10Feb 5, 2026Updated 5 months ago
- RAPID: a Real-time, GPU-Accelerated Parallelized Image processing software for large-scale multiplexed fluorescence microscopy Data☆12Dec 3, 2022Updated 3 years ago
- Acquire bright field images along with the super resolution data and use it to track drift in 3D with nanometer precision!☆11Jun 22, 2023Updated 3 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Nov 25, 2025Updated 7 months ago
- Resources for teaching/preparing to teach bioimage analysis☆63Updated this week