CellMigrationLab / Fast4DRegLinks
Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/or z-directions.
☆40Updated 2 months ago
Alternatives and similar repositories for Fast4DReg
Users that are interested in Fast4DReg are comparing it to the libraries listed below
Sorting:
- ☆51Updated 2 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆27Updated 2 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆75Updated last week
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 3 months ago
- Z-stack Depth Colorcode ImageJ FIJI plugin☆24Updated 4 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated 4 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 2 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated last week
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆65Updated last week
- Running compute-intense parts of BigStitcher distributed☆26Updated this week
- Process images using SimpleITK in napari☆21Updated 2 months ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 7 months ago
- Particle tracking by solving linear assignment problem.☆53Updated last month
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 7 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 3 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 5 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆17Updated 2 months ago
- A napari plugin for clustering objects according to their properties.☆87Updated this week
- StarDist plugin for napari☆38Updated 10 months ago
- MiC is an ImageJ plugin to compare segmentation masks☆19Updated last month
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆80Updated last week
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆54Updated 8 months ago
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- A tool for manual pointwise deformable registration using bigdataviewer.☆33Updated last week
- MultiModal Big Image Data Sharing and Exploration☆15Updated 2 years ago
- Resources for teaching/preparing to teach bioimage analysis☆58Updated last week
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated 2 months ago