bigdataviewer / bigdataviewer-playground
☆19Updated 3 weeks ago
Alternatives and similar repositories for bigdataviewer-playground:
Users that are interested in bigdataviewer-playground are comparing it to the libraries listed below
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆36Updated last month
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- ImageJ convenience layer for N5☆16Updated 2 weeks ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆16Updated last month
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated 2 years ago
- Commands and Classes for interfacing between Imaris and Fiji☆12Updated 6 months ago
- Code for simulating a multi-view acquisition including attenuation, convolution, reduced sampling and poission noise☆12Updated 2 years ago
- python tools for BigDataViewer☆22Updated 3 months ago
- Online documentation and reference for CLIJ☆28Updated 3 years ago
- Generate markdown notebooks from ImageJ Macro☆24Updated 4 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆57Updated last month
- MethodsJ2☆14Updated 2 years ago
- The repository of NEUBIAS textbook 2021☆10Updated 3 years ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆49Updated 2 months ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Updated 3 years ago
- Running compute-intense parts of BigStitcher distributed☆26Updated this week
- Little OBjects Segmentation and Tracking EnviRonment☆9Updated 4 years ago
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Updated 7 years ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated 2 weeks ago
- ☆35Updated this week
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- mcib3d core library for 3D ImageJ suite☆14Updated 2 years ago
- ☆10Updated 4 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆22Updated 3 years ago
- Visualizing feature measurements on label images in napari☆10Updated 8 months ago
- Process images using SimpleITK in napari☆20Updated 6 months ago
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆35Updated last year
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 2 weeks ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 4 months ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 4 months ago