tpecot / DeepLearningForBiologists_FromClassificationToSegmentationLinks
☆13Updated 8 months ago
Alternatives and similar repositories for DeepLearningForBiologists_FromClassificationToSegmentation
Users that are interested in DeepLearningForBiologists_FromClassificationToSegmentation are comparing it to the libraries listed below
Sorting:
- ☆51Updated 7 months ago
- StarDist plugin for ImageJ☆30Updated 3 years ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated 2 years ago
- ImageJ macro for the analysis of foci (e.g. DNA damage) in nuclei/cells☆21Updated last week
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆82Updated 2 weeks ago
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆81Updated last week
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated last year
- ☆12Updated last year
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- ☆20Updated last month
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆18Updated 2 weeks ago
- Imagej toolset to ease hyperstacks visualization and handling☆23Updated last year
- A collection of demonstration materials for MorphoLibJ.☆12Updated 2 years ago
- ☆16Updated last year
- ☆13Updated 2 weeks ago
- ☆16Updated 2 years ago
- Materials for the "ImageJ/Fiji Level 2: Automation and batch processing using macros" course taught at the Wolfson Bioimaging Facility, U…☆12Updated 3 years ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 7 months ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆39Updated last week
- Course and exercises on deep learning for microscopy image analysis☆21Updated 2 weeks ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last week
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆230Updated 2 years ago
- A platform for compiling, analyzing, and exploring tracking data☆47Updated 3 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆52Updated 7 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆20Updated 2 years ago
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 7 months ago
- ☆15Updated last week
- napari plugin for trackastra☆17Updated 3 weeks ago