tpecot / DeepLearningForBiologists_FromClassificationToSegmentation
☆11Updated last month
Alternatives and similar repositories for DeepLearningForBiologists_FromClassificationToSegmentation:
Users that are interested in DeepLearningForBiologists_FromClassificationToSegmentation are comparing it to the libraries listed below
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆14Updated 2 weeks ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated 3 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 7 months ago
- A collection of demonstration materials for MorphoLibJ.☆12Updated 2 years ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated 2 years ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated last week
- Course and exercises on deep learning for microscopy image analysis☆16Updated last year
- Generate markdown notebooks from ImageJ Macro☆24Updated 4 years ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 2 weeks ago
- Materials for the "ImageJ/Fiji Level 2: Automation and batch processing using macros" course taught at the Wolfson Bioimaging Facility, U…☆12Updated 3 years ago
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated 6 months ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- StarDist plugin for ImageJ☆29Updated 2 years ago
- ☆49Updated last week
- ☆22Updated last year
- ☆16Updated 9 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 2 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆26Updated 11 months ago
- A platform for compiling, analyzing, and exploring tracking data☆44Updated last month
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆16Updated this week
- A Board Game to teach co-localization analysis☆13Updated 6 months ago
- ☆16Updated 2 months ago
- ImageJ macro for the analysis of foci (e.g. DNA damage) in nuclei/cells☆16Updated 3 weeks ago
- ☆12Updated last year
- ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)☆11Updated 3 years ago
- ☆15Updated last year
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Updated 7 years ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 3 years ago
- Handmade ImageJ / Fiji LUTs for microscopy, scientific good visualization and art.☆11Updated 3 months ago