napari widgets for start-to-finish batch processing
☆15Jan 2, 2026Updated 2 months ago
Alternatives and similar repositories for napari-ndev
Users that are interested in napari-ndev are comparing it to the libraries listed below
Sorting:
- ☆15Updated this week
- ☆18Oct 12, 2019Updated 6 years ago
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆29Updated this week
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 2 months ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆14Feb 4, 2026Updated 3 weeks ago
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- imageC / EVAnalyzer2 - High throughput biological image processor☆10Feb 13, 2026Updated 2 weeks ago
- Computational workflows to assess phototoxicity in live-cell microscopy experiments☆11Sep 15, 2025Updated 5 months ago
- Teaching materials and outline for the Pasteur Bioimage Analysis vour☆16Jun 2, 2025Updated 9 months ago
- A napari plugin to view and edit metadata☆13Updated this week
- Rust extension module for FIJI-like colormapping and channel blending☆19Feb 9, 2026Updated 3 weeks ago
- Course on Deep Learning for imaging using PyTorch☆13Feb 2, 2022Updated 4 years ago
- A template repo used to make new napari plugins☆32Updated this week
- git-bob uses AI to solve Github-issues. It runs inside the Github CI, no need to install anything on your computer.☆63Sep 15, 2025Updated 5 months ago
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 3 years ago
- A napari plugin to analysis point spread functions.☆12Mar 28, 2025Updated 11 months ago
- Materials for the "ImageJ/Fiji Level 2: Automation and batch processing using macros" course taught at the Wolfson Bioimaging Facility, U…☆12Jan 24, 2022Updated 4 years ago
- Visualizing feature measurements on label images in napari☆10Jul 24, 2024Updated last year
- Use ImageJ functionality from napari☆33Jan 2, 2026Updated 2 months ago
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 2 years ago
- GPU-accelerated Image Processing library for C++☆16Feb 24, 2026Updated last week
- ImageJ macros to run Cellpose from Fiji (using the plugin from BIOP-EPFL) and to match nuclei and cell body label maps.☆19Mar 11, 2025Updated 11 months ago
- Tutorial for SciPy 2021 Bioimage Analysis Fundamentals in Python☆31Jul 13, 2021Updated 4 years ago
- ilastik plugin for napari☆14Dec 15, 2025Updated 2 months ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆20Feb 10, 2026Updated 3 weeks ago
- The 2025 version of cellPLATO☆15Jan 23, 2026Updated last month
- ☆15Jul 29, 2022Updated 3 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Jul 7, 2025Updated 7 months ago
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆39Jul 9, 2024Updated last year
- GPU-accelerated Image Processing library for Python☆53Updated this week
- An introduction to bioimage analysis - http://bioimagebook.github.io☆76Feb 5, 2026Updated 3 weeks ago
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆85Feb 10, 2026Updated 3 weeks ago
- ImageJ plugins to run ilastik workflows☆26Feb 10, 2026Updated 3 weeks ago
- QuPath extension for Cellsparse☆19May 6, 2025Updated 9 months ago
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆21Nov 24, 2025Updated 3 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated last year
- ☆21Dec 13, 2025Updated 2 months ago
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Oct 30, 2017Updated 8 years ago
- A platform for compiling, analyzing, and exploring tracking data☆48Feb 2, 2026Updated last month