BioImaging-NKI / Cellpose-FijiLinks
ImageJ macros to run Cellpose from Fiji (using the plugin from BIOP-EPFL) and to match nuclei and cell body label maps.
☆17Updated 7 months ago
Alternatives and similar repositories for Cellpose-Fiji
Users that are interested in Cellpose-Fiji are comparing it to the libraries listed below
Sorting:
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆39Updated 5 months ago
- A platform for compiling, analyzing, and exploring tracking data☆47Updated 2 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated last year
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 11 months ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆81Updated last week
- Lectures for a napari training course☆51Updated 2 years ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- QuickFigures is a toolset for creating scientific figures see publication for details☆35Updated last year
- ☆51Updated 5 months ago
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆79Updated 2 weeks ago
- ☆12Updated last year
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆59Updated last year
- ImageJ macros and scripts written at the imaging facility MRI☆37Updated this week
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- ☆16Updated last year
- StarDist plugin for napari☆39Updated last year
- An introduction to bioimage analysis - http://bioimagebook.github.io☆73Updated 2 months ago
- QuPath extension for Cellsparse☆19Updated 5 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 4 months ago
- Generate markdown notebooks from ImageJ Macro☆26Updated 4 years ago
- Whole slide image registration through wsireg in napari.☆12Updated 2 years ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆149Updated 3 weeks ago
- Deconvolution of widefield microscopy images and generation of point spread functions☆54Updated this week
- A napari plugin for clustering objects according to their properties.☆88Updated this week
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Updated 8 months ago
- Accurate and efficient spot detection for microscopy data☆105Updated 2 weeks ago
- Development of PICASSO plugin for napari☆16Updated 2 years ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- The 2025 version of cellPLATO☆15Updated 3 weeks ago