BioImaging-NKI / Cellpose-Fiji
ImageJ macros to run Cellpose from Fiji (using the plugin from BIOP-EPFL) and to match nuclei and cell body label maps.
☆14Updated last week
Alternatives and similar repositories for Cellpose-Fiji:
Users that are interested in Cellpose-Fiji are comparing it to the libraries listed below
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated 5 months ago
- A platform for compiling, analyzing, and exploring tracking data☆43Updated last week
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆36Updated 3 weeks ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆41Updated this week
- QuickFigures is a toolset for creating scientific figures see publication for details☆35Updated last year
- ☆47Updated 5 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆33Updated 4 months ago
- ☆15Updated 7 months ago
- StarDist plugin for napari☆37Updated 6 months ago
- Generate markdown notebooks from ImageJ Macro☆24Updated 4 years ago
- ☆12Updated 10 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆22Updated 3 years ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆25Updated 9 months ago
- ImageJ macros and scripts written at the imaging facility MRI☆33Updated this week
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆75Updated 2 weeks ago
- ☆19Updated 3 years ago
- The 2023 version of cellPLATO☆14Updated 4 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 5 months ago
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆24Updated 5 months ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆18Updated 2 months ago
- Guides and code for 3D nuclear instance segmentation☆21Updated last week
- QuPath extension for Cellsparse☆18Updated 3 months ago
- MethodsJ2☆14Updated 2 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 4 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆13Updated last week
- ☆17Updated 2 years ago
- Materials for the "ImageJ/Fiji Level 2: Automation and batch processing using macros" course taught at the Wolfson Bioimaging Facility, U…☆12Updated 3 years ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆15Updated last week
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆62Updated last year