BioImaging-NKI / Cellpose-FijiLinks
ImageJ macros to run Cellpose from Fiji (using the plugin from BIOP-EPFL) and to match nuclei and cell body label maps.
☆17Updated 6 months ago
Alternatives and similar repositories for Cellpose-Fiji
Users that are interested in Cellpose-Fiji are comparing it to the libraries listed below
Sorting:
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆38Updated 4 months ago
- A platform for compiling, analyzing, and exploring tracking data☆47Updated last month
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated 11 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- Deconvolution of widefield microscopy images and generation of point spread functions☆52Updated last week
- QuPath extension for Cellsparse☆19Updated 5 months ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆81Updated 3 weeks ago
- QuickFigures is a toolset for creating scientific figures see publication for details☆35Updated last year
- StarDist plugin for napari☆39Updated last year
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 10 months ago
- ImageJ macros and scripts written at the imaging facility MRI☆35Updated last week
- ☆51Updated 5 months ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆148Updated last week
- Lectures for a napari training course☆50Updated 2 years ago
- MethodsJ2☆14Updated 3 years ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 3 months ago
- A napari plugin for clustering objects according to their properties.☆88Updated this week
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- Python scripts library for Aivia. Ask your questions on the forum >>☆15Updated 2 weeks ago
- An introduction to bioimage analysis - http://bioimagebook.github.io☆73Updated last month
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Updated 8 months ago
- Image registration (alignment) software for large microscopy images☆25Updated last year
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆39Updated last year
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆63Updated 2 years ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆44Updated 5 months ago
- Accurate and efficient spot detection for microscopy data☆101Updated this week
- Generate markdown notebooks from ImageJ Macro☆26Updated 4 years ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆52Updated 5 months ago