Imagej toolset to ease hyperstacks visualization and handling
☆23Feb 9, 2026Updated 8 months ago
Alternatives and similar repositories for Visualization_toolset
Users that are interested in Visualization_toolset are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated 2 years ago
- ☆10Nov 29, 2024Updated last year
- Z-stack Depth Colorcode ImageJ FIJI plugin☆25Nov 6, 2025Updated 11 months ago
- Smooth 2D manifold extraction from 3D image stack☆22Mar 18, 2018Updated 8 years ago
- Single molecule density estimation by fully convolutional neural networks☆11Apr 9, 2018Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Sep 11, 2021Updated 5 years ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆102Feb 17, 2023Updated 3 years ago
- ☆22May 12, 2021Updated 5 years ago
- Analysis of TrackMate XML outputs in R☆17Sep 18, 2026Updated last month
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆103Oct 13, 2026Updated 2 weeks ago
- A minimal dependency napari plugin giving access to scikit-image functions☆25Oct 5, 2026Updated 3 weeks ago
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆39Jul 9, 2024Updated 2 years ago
- BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.☆137Oct 16, 2026Updated last week
- A Micro-Manager plugin that loads easily reconfigurable user interfaces.☆11Aug 30, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Extract surfaces from 3D microscopy images and project them to 2D for analysis and visualization☆12Jul 17, 2026Updated 3 months ago
- A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.☆200Sep 1, 2026Updated last month
- Handmade ImageJ / Fiji LUTs for microscopy, scientific good visualization and art.☆16Jan 9, 2025Updated last year
- ☆14Jan 25, 2024Updated 2 years ago
- A platform for compiling, analyzing, and exploring tracking data☆51Updated this week
- CMCI textbook 2, for ImageJ macro course☆19Nov 6, 2017Updated 8 years ago
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 3 years ago
- Denoising via adaptive binning.☆14Aug 28, 2026Updated 2 months ago
- translate-pptx is a command line tool that translates PowerPoint PPTX files from one language to another.☆21Oct 12, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆27Sep 26, 2024Updated 2 years ago
- QuPath extension for Cellsparse☆19May 6, 2025Updated last year
- ☆20May 1, 2025Updated last year
- ☆53May 1, 2025Updated last year
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆242Sep 11, 2023Updated 3 years ago
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆184Jul 30, 2026Updated 2 months ago
- A collection of LUTs for ImageJ/Fiji☆80Jun 20, 2020Updated 6 years ago
- GPU-accelerated image processing for everyone☆60Jul 4, 2024Updated 2 years ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆137Apr 9, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- FLIM-focused framework for multimodal single-cell imaging: extract features from FLIM and QPI data, then analyze any tabular dataset inte…☆19Updated this week
- Liquid handling robot for in situ serial multiplexing☆18Apr 7, 2017Updated 9 years ago
- Gamified image segmentation quality estimation☆20May 1, 2025Updated last year
- quantixed FIJI update site☆18Oct 8, 2026Updated 2 weeks ago
- Color Extractor is a Web App that allows you to extract palettes of colors from various publicly available colormaps, as well as from you…☆10Jul 26, 2026Updated 3 months ago
- ☆18Nov 3, 2023Updated 2 years ago
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Jun 6, 2023Updated 3 years ago