Alternatives and similar repositories for NGS-

Users that are interested in NGS- are comparing it to the libraries listed below

• RegnerM2015 / scENDO_scOVAR_2020
  This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell landscape of human gynecologic malignan…
  ☆49Updated 2 years ago
• Aleksobrad / single-cell-rcc-pipeline
  Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…
  ☆53Updated 4 years ago
• williamsdrake / oralAtlas
  Code used to analyze datasets and generate figures from Williams et al., 2021
  ☆17Updated 4 years ago
• Teichlab / SKM_ageing_atlas
  ☆12Updated last year
• youqiongye / CRC_scRNAseq
  ☆47Updated 3 years ago
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆29Updated 4 years ago
• compbioNJU / scPDAC
  R code used to analyze single cell PDAC data
  ☆41Updated last year
• Core-Bioinformatics / MASLD-NASH
  scripts associated with NAFLD-NASH project
  ☆25Updated last year
• Lan-lab / sc-GC
  ☆31Updated 3 years ago
• lanagarmire / Asgard
  ☆44Updated last year
• shyhihihi / MERCI
  MERCI for tracing of mitochondrion transfer between single cancer and T cells
  ☆25Updated last year
• genecell / COSG
  Accurate and fast cell marker gene identification with COSG
  ☆53Updated 2 months ago
• gabrielakinker / CCLE_heterogeneity
  ☆62Updated last year
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆39Updated 5 years ago
• Xiaxy-XuLab / PanCAF
  ☆37Updated 3 years ago
• 123anjuan / HMA
  Human Muscle Ageing Cell Atlas
  ☆20Updated last year
• jalon9358 / LianLab_CRCLM
  ☆15Updated 2 years ago
• ma-jq / B
  ☆29Updated last year
• hedyBao / HNSCC_scRNA
  ☆41Updated last year
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated 3 months ago
• icbi-lab / luca
  Single-cell Lung Cancer Atlas with 1.2M cells
  ☆85Updated 11 months ago
• winstonbecker / scCRC_continuum
  ☆45Updated 3 years ago
• QiangShiPKU / CoVarNet
  ☆50Updated 4 months ago
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆68Updated last year
• Teichlab / PanGIAtlas
  Integration of gut cell atlases
  ☆30Updated last month
• KChen-lab / METAFlux
  ☆79Updated last year
• tanlabcode / spatial-bonemarrow-atlas
  This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…
  ☆87Updated last year
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• single-cell-BGI / NHPCA
  ☆18Updated 4 years ago
• JerryZhang-1222 / starTracer
  A High Effect Marker Gene Search Tool for Single-cell RNA-seq Analysis
  ☆33Updated last year