CellNet: network biology applied to stem cell engineering
☆56May 8, 2023Updated 3 years ago
Alternatives and similar repositories for CellNet
Users that are interested in CellNet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CellNet, for cancer☆10Jul 14, 2022Updated 3 years ago
- SingleCellNet: classify single cells across species and platforms☆141Aug 21, 2023Updated 2 years ago
- gene regulatory network reconstruction from scRNA-Seq☆25Feb 10, 2022Updated 4 years ago
- singleCellNet in Python☆16Feb 25, 2026Updated 2 months ago
- ☆11Nov 24, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆26Mar 31, 2026Updated last month
- Code used for the single-cell RNA-Seq batch effects paper☆12Sep 25, 2017Updated 8 years ago
- Enhanced Chromatin Occupancy (EChO)☆13Jan 8, 2020Updated 6 years ago
- Analysis Pipeline to analyze Nanopore RNAseq data☆29Mar 1, 2022Updated 4 years ago
- Marker gene selection from scRNA-seq data☆16Sep 15, 2020Updated 5 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆31Aug 8, 2023Updated 2 years ago
- A detailed guide to analise and integrate small-RNASeq and RNASeq samples using miARma-Seq☆11Oct 16, 2019Updated 6 years ago
- Rmarkdown / compiled html files for human reprogramming dataset analysis☆18Jun 11, 2020Updated 5 years ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Jun 24, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆31Oct 24, 2024Updated last year
- Scripts for reproducing analyses of large RNA-seq datasets☆15May 22, 2019Updated 6 years ago
- Trends in scientific publishing delays☆11Aug 20, 2021Updated 4 years ago
- STAT540 Statistical Methods for High Dimensional Biology, January - April 2014☆18Apr 28, 2014Updated 12 years ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆334Apr 23, 2024Updated 2 years ago
- TFFM framework☆13Sep 22, 2025Updated 7 months ago
- A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences☆14May 9, 2026Updated last week
- ☆11Jun 10, 2024Updated last year
- Primer design for ATAC-qPCR☆13Jan 11, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆24Aug 25, 2025Updated 8 months ago
- Bioconductor cheat sheet☆191Aug 26, 2024Updated last year
- Big Data and Machine Intelligence, Spring 2021.☆12Jul 2, 2021Updated 4 years ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆253Apr 1, 2026Updated last month
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆17Apr 8, 2021Updated 5 years ago
- Web tool for exploring cell-cell ligand-receptor mediated communication networks☆23Aug 18, 2016Updated 9 years ago
- Code accompanying the manuscript "Broad transcriptomic dysregulation across the cerebral cortex in ASD".☆13Aug 10, 2022Updated 3 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆12Apr 20, 2023Updated 3 years ago
- ☆15Oct 19, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A tool for researchers working in synthetic biology and virology to design robotic wet lab protocols using a visual UI without coding.☆32Jul 28, 2018Updated 7 years ago
- R package for Bioconductor submission☆40Dec 8, 2022Updated 3 years ago
- Batch effects and the effective design of single-cell gene expression studies☆107Jul 23, 2019Updated 6 years ago
- ☆17Jun 6, 2022Updated 3 years ago
- ☆14Aug 13, 2023Updated 2 years ago
- ☆16Jun 11, 2019Updated 6 years ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆259Jan 10, 2026Updated 4 months ago