CellNet, for cancer
☆11Jul 14, 2022Updated 4 years ago
Alternatives and similar repositories for cancerCellNet
Users that are interested in cancerCellNet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- singleCellNet in Python☆18Aug 6, 2026Updated 3 weeks ago
- A computational method for comparing cellular profiles with the flexibility to place a higher weight on functional features of interest.☆12Jan 31, 2023Updated 3 years ago
- gene regulatory network reconstruction from scRNA-Seq☆25Feb 10, 2022Updated 4 years ago
- Pipeline analysis for whole exome sequencing of pancreatic cancer PDX models☆23Oct 22, 2018Updated 7 years ago
- CellNet: network biology applied to stem cell engineering☆58May 8, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- CancerMIRNome - an interactive analysis and visualization database for miRNome profiles of human cancer☆12Aug 9, 2024Updated 2 years ago
- ☆12Dec 5, 2018Updated 7 years ago
- Single-cell Consensus Clusters of Encoded Subspaces☆15Jul 27, 2026Updated last month
- Useful bash one-liners for bioinformatics.☆10Jun 26, 2017Updated 9 years ago
- ☆19Oct 27, 2021Updated 4 years ago
- ☆13Feb 19, 2021Updated 5 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Apr 16, 2021Updated 5 years ago
- Selecting the optimal trajectory inference based on a given dataset and user input 🔮☆19Jun 29, 2020Updated 6 years ago
- Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer☆18Nov 30, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Source code for 'Machine Learning Using R' by Karthik Ramasubramanian and Abhishek Singh☆43Nov 17, 2019Updated 6 years ago
- SingleCellNet: classify single cells across species and platforms☆141Aug 21, 2023Updated 3 years ago
- Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers☆21Oct 12, 2022Updated 3 years ago
- Code related to the Celligner manuscript☆46Oct 30, 2020Updated 5 years ago
- A General Framework for Consensus Partitioning☆65Jan 30, 2026Updated 7 months ago
- Cross-platform data for sequencing-based spatial transcriptomics benchmarking☆13Oct 26, 2023Updated 2 years ago
- An R Interface to the ImmuneSpace database portal☆24Nov 28, 2023Updated 2 years ago
- This repository contains HCA Benchmarking codes☆27Nov 11, 2019Updated 6 years ago
- Convolutional neural network for categorising prostate cancer from MRI images.☆11Jul 22, 2020Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Predicting transcription factor binding in single cells through deep learning☆14Oct 14, 2022Updated 3 years ago
- LaTeX template of graduate Thesis [University of Chinese Academy of Sciences]☆12Nov 7, 2017Updated 8 years ago
- Python package to annotate and visualize gene fusions.☆66Apr 14, 2026Updated 4 months ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Jul 1, 2020Updated 6 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆31Aug 8, 2023Updated 3 years ago
- A shiny-based web tool for interactive analysis of DepMap data☆25Feb 13, 2021Updated 5 years ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆29Jul 10, 2023Updated 3 years ago
- ☆30Jul 8, 2018Updated 8 years ago
- Contribution of systemic and somatic factors to clinical response and resistance in urothelial cancer: an exploratory multi-omic analysis☆24Oct 31, 2017Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆15Apr 17, 2026Updated 4 months ago
- Filtering of PDX samples for mouse derived reads☆31Jul 28, 2026Updated last month
- Calculating Tumor microenvironment score☆29Jan 20, 2023Updated 3 years ago
- ☆14Apr 4, 2023Updated 3 years ago
- Tumor type classifier using cancer genomic panel sequencing data☆13Mar 12, 2024Updated 2 years ago
- A floor plan is a type of drawing that shows you the layout of a home or property from above. The floor plan may depict an entire buildin…☆13Dec 18, 2025Updated 8 months ago
- ☆39Aug 7, 2026Updated 3 weeks ago