A CRISPR repeat|spacer analysis tool
☆20May 7, 2021Updated 5 years ago
Alternatives and similar repositories for CRISPRviz
Users that are interested in CRISPRviz are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CRISPR discovery pipeline☆33Nov 2, 2018Updated 7 years ago
- Tools to analyze the differences and similarities between CRISPR arrays☆11Dec 17, 2024Updated last year
- ☆12Apr 21, 2016Updated 10 years ago
- ☆16Apr 11, 2023Updated 3 years ago
- ☆33Jul 27, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆13Jul 23, 2026Updated 3 weeks ago
- Accurate identification of bacteriophages from metagenomic data using Transformer☆22Nov 6, 2024Updated last year
- A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences☆103Jul 11, 2023Updated 3 years ago
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year
- ☆16Jun 21, 2022Updated 4 years ago
- Plasmid and antimicrobial resistance pipeline☆16Apr 30, 2026Updated 3 months ago
- The CRISPR assembler☆35May 13, 2021Updated 5 years ago
- ☆34Dec 20, 2023Updated 2 years ago
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Metagenomic Binning Algorithm☆55Jan 16, 2026Updated 7 months ago
- Mining CRISPRs in Environmental Datasets☆125Feb 10, 2023Updated 3 years ago
- Prediction of prophages from bacterial genomes☆87May 1, 2026Updated 3 months ago
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆26May 8, 2024Updated 2 years ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆41Oct 23, 2024Updated last year
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆129Oct 30, 2023Updated 2 years ago
- Bacterial taxonomy construction and evaluation in R☆16Jan 30, 2024Updated 2 years ago
- reference-based long read assemblies of bacterial genomes☆52Aug 9, 2021Updated 5 years ago
- Locus and lineage tests for bacterial GWAS☆28Oct 5, 2017Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Large scale ancestry inference from PCA data☆24May 2, 2023Updated 3 years ago
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆48May 8, 2024Updated 2 years ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆25Oct 16, 2024Updated last year
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- My personal Visual Studio Code settings☆12Sep 3, 2020Updated 5 years ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Updated this week
- Identify phage regions in bacterial genomes for masking purposes☆33Sep 5, 2019Updated 6 years ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆182Apr 16, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Run any CLI tool on a Reproducible Isolated Environment ⚙️⚡☆15Updated this week
- Easy-to-use web application for visualization and comparison of genomes in Genbank file☆22May 27, 2022Updated 4 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆28Sep 7, 2019Updated 6 years ago
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆110Feb 15, 2024Updated 2 years ago
- Some sleuth walkthroughs to help you get started☆10Jul 26, 2018Updated 8 years ago
- CGView is a Java package for generating high-quality, zoomable maps of circular genomes.☆55Mar 2, 2026Updated 5 months ago
- Systematic ProtEin AnnotatoR☆19Sep 20, 2025Updated 10 months ago