kloetzl / biozsh
the z in bioinformatics
☆33Updated last year
Related projects: ⓘ
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 6 years ago
- Malleable All-seeing Journal Of Research Artifacts☆36Updated last year
- A collection of modules and sub-workflows for Nextflow☆25Updated this week
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆43Updated 2 years ago
- Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach☆35Updated 13 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆34Updated 11 months ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆30Updated 2 months ago
- ChromeQC: Summarize sequencing library quality of 10x Genomics Chromium linked reads☆15Updated 5 years ago
- full taxonomer cython repository☆22Updated 4 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆40Updated 3 years ago
- Validate FastQ Files☆36Updated 5 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- Maximum likelihood demultiplexing☆46Updated last year
- ☆23Updated 5 years ago
- Pipelines for processing malaria parasite and mosquito genome sequence data.☆14Updated 7 months ago
- Using kallisto for metagenomic analysis☆50Updated 7 years ago
- Splice junction analysis and filtering from BAM files☆37Updated 2 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated last year
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆67Updated 6 months ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Updated last year
- vembrane filters VCF records using python expressions☆56Updated last month
- Tutorial on using E-utilities☆19Updated 3 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated last year
- An automated RNA-seq pipeline using Nextflow☆36Updated 2 months ago
- Snakemake profile for running jobs on an LSF cluster☆36Updated last month
- Short idioms and patterns for transforming, merging and managing files and channels in Nextflow.☆16Updated 6 months ago
- Params validation plugin for Nextflow pipelines☆48Updated last month
- A tool for evaluating RNA seq mapping☆23Updated 5 years ago