Alternatives and similar repositories for biozsh

Users that are interested in biozsh are comparing it to the libraries listed below

• nh13 / snakeparse
  Making Snakemake workflows into full-fledged command line tools since 1999.
  ☆51Updated 7 years ago
• fmalmeida / ngs-preprocess
  A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
  ☆36Updated last year
• gregpoore / tcga_rebuttal
  Re-analysis of data provided by Gihawi et al. 2023 bioRxiv
  ☆26Updated 2 years ago
• micans / nextflow-idioms
  Short idioms and patterns for transforming, merging and managing files and channels in Nextflow.
  ☆17Updated 3 months ago
• nf-core / deepvariant
  Please consider using/contributing to https://github.com/nf-core/sarek
  ☆41Updated 4 years ago
• Arcadia-Science / seqqc
  A Nextflow pipeline to identify quality control issues with new sequencing data.
  ☆28Updated 2 years ago
• bionitio-team / bionitio-python
  Demonstrating best practices for bioinformatics command line tools
  ☆26Updated 5 years ago
• clintval / cvbio
  Artisanal 🤣 bioinformatics tools and pipelines in Scala
  ☆20Updated 5 years ago
• qbic-pipelines / rnadeseq
  Differential gene expression analysis and pathway analysis of RNAseq data
  ☆32Updated 3 months ago
• gschofl / reutils
  Talk to the NCBI EUtils
  ☆22Updated 5 years ago
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆44Updated 4 months ago
• koelling / dnacol
  Color DNA/RNA bases in terminal output
  ☆21Updated 8 years ago
• addgene / openbio
  A collection of open source bioinformatics tools developed and used by Addgene.
  ☆11Updated last month
• ctb / 2019-snakemake-ucdavis
  Intro to workflows for efficient automated data analysis, using snakemake.
  ☆32Updated 6 years ago
• sanger-pathogens / gff3toembl
  Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
  ☆29Updated 6 years ago
• seandavi / GFFutils
  Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach
  ☆36Updated 14 years ago
• seqeralabs / nf-training-advanced
  Customer workshop materials
  ☆18Updated 2 years ago
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 6 years ago
• kkdey / Logolas
  R package for Enrichment Depletion Logos (EDLogos) and String Logos
  ☆27Updated 6 years ago
• salmonteam / SalmonBlogResponse
  Response to blog post about Salmon
  ☆37Updated 8 years ago
• alejandrogzi / gxf2bed
  fastest GTF/GFF-to-BED converter chilling around
  ☆28Updated 3 weeks ago
• SamStudio8 / majora2
  Malleable All-seeing Journal Of Research Artifacts
  ☆35Updated 2 years ago
• FredHutch / microbial-rnaseq
  Analysis of RNAseq data from (host-associated) microbial mixtures
  ☆12Updated 5 years ago
• ruolin / strawberry
  A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)
  ☆24Updated 4 years ago
• multimeric / TidyMultiqc
  Converts 'MultiQC' Reports into Tidy Data Frames
  ☆18Updated last year
• gtonkinhill / TCGA_analysis
  ☆27Updated 2 years ago
• carpentries-incubator / workflows-nextflow
  Workflow management with Nextflow and nf-core
  ☆26Updated 9 months ago
• bcthomas / pullseq
  Utility program for extracting sequences from a fasta/fastq file
  ☆35Updated 10 months ago
• gogetdata / ggd-cli
  The command-line interface to GGD
  ☆42Updated 3 years ago
• nextflow-io / nf-hack18
  Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/
  ☆19Updated 6 years ago