tseemann / phastafLinks
Identify phage regions in bacterial genomes for masking purposes
☆34Updated 6 years ago
Alternatives and similar repositories for phastaf
Users that are interested in phastaf are comparing it to the libraries listed below
Sorting:
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- Prediction of prophages from bacterial genomes☆79Updated 3 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated 10 months ago
- ☆20Updated last year
- post processing of bacterial pangenome gene presence/absence matrices☆61Updated 6 months ago
- Phigaro is a scalable command-line tool for predicting phages and prophages☆52Updated last year
- A tool for removing redundant genomes from a set of assemblies☆76Updated last week
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated last month
- Small utility script to submit genomes to PHASTER for phage detection☆24Updated 3 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆60Updated 5 months ago
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago
- Gene Absence Presence Identification tool.☆27Updated 5 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- ☆24Updated 6 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆75Updated 2 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆52Updated last month
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Prophage Activity Estimator☆26Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆48Updated last week
- whole genome MLST analysis☆47Updated 3 months ago
- Comparisons of multiple different prophage predictions☆26Updated 3 years ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 4 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆61Updated 3 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆39Updated 2 years ago
- Bacterial GWAS analysis☆43Updated last month
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆49Updated last week
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆41Updated 4 years ago