tseemann / phastafLinks
Identify phage regions in bacterial genomes for masking purposes
☆33Updated 6 years ago
Alternatives and similar repositories for phastaf
Users that are interested in phastaf are comparing it to the libraries listed below
Sorting:
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 10 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- Gene Absence Presence Identification tool.☆27Updated 9 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- Bacterial GWAS analysis☆46Updated this week
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 3 years ago
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- Recombination-free trees☆63Updated 4 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 5 months ago
- Split Kmer Analysis☆67Updated 3 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 4 years ago
- Small utility script to submit genomes to PHASTER for phage detection☆24Updated 4 years ago
- A tool for removing redundant genomes from a set of assemblies☆78Updated 4 months ago
- ☆20Updated last year
- Prediction of prophages from bacterial genomes☆80Updated 7 months ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆80Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated last month
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- Bifrost graph gene caller.☆97Updated last week
- Predict plasmids from uncorrected long read data☆41Updated 2 months ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆41Updated 2 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆61Updated 2 years ago
- ☆24Updated 7 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆54Updated 2 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆64Updated 7 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆57Updated 8 months ago
- Automated strain separation of low-complexity metagenomes☆52Updated 4 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆52Updated last month
- whole genome MLST analysis☆50Updated 7 months ago