iquasere / reCOGnizer
A tool for domain based annotation with databases from the Conserved Domains Database
☆30Updated 5 months ago
Alternatives and similar repositories for reCOGnizer:
Users that are interested in reCOGnizer are comparing it to the libraries listed below
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 6 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆25Updated this week
- Pipeline for major biological analyses.☆34Updated 2 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆37Updated 2 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆31Updated last year
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆40Updated 2 months ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated 2 years ago
- a python package for automated generation of phylogenetic trees from genbank files☆20Updated 3 weeks ago
- ☆38Updated 2 months ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆29Updated 7 months ago
- PHANOTATE: a tool to annotate phage genomes.☆72Updated 2 months ago
- ☆27Updated 2 months ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆46Updated 3 weeks ago
- Unified Human Gut Virome Catalog☆27Updated 7 months ago
- ☆28Updated last week
- MacSyFinder models allowing for a systematic search of anti-phage systems☆21Updated 3 weeks ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆53Updated 7 months ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆39Updated 3 months ago
- ☆22Updated last year
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15Updated last year
- ☆14Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆54Updated this week
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆45Updated last month
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆32Updated 3 years ago
- BiG-MEx implementation as Docker images and R packages☆12Updated 3 years ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 4 months ago
- A toolkit for prokaryotic comparative genomics☆44Updated last month
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago