Alternatives and similar repositories for CRISPRloci

Users that are interested in CRISPRloci are comparing it to the libraries listed below

• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆32Updated 2 years ago
• leylabmpi / endoR
  Code and manual of the endoR R-package (Ruaud et al, in preparation).
  ☆12Updated last year
• BackofenLab / CRISPRidentify
  ☆30Updated 6 months ago
• wilkelab / Opfi
  A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.
  ☆21Updated 3 years ago
• Legana / ampir
  antimicrobial peptide prediction in R
  ☆31Updated 6 months ago
• victoriapascal / gutsmash
  gutSMASH
  ☆54Updated 6 months ago
• PedroMTQ / mantis
  A package to annotate protein sequences
  ☆58Updated 4 months ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆61Updated last year
• nselem / corason
  Bioinformatic Tools for study Evolution of metabolic diversity
  ☆34Updated last year
• labomics / MetaLogo
  MetaLogo: a heterogeneity-aware sequence logo generator and aligner
  ☆21Updated 2 years ago
• waldronlab / curatedMetagenomicDataAnalyses
  Analyses in R and Python Using curatedMetagenomicData
  ☆32Updated 2 months ago
• donia-lab / MetaBGC
  A metagenomic strategy for harnessing the chemical repertoire of the human microbiome
  ☆33Updated last week
• SWittouck / SCARAP
  A toolkit for prokaryotic comparative genomics
  ☆49Updated 5 months ago
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆27Updated 2 months ago
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆41Updated last month
• AlvaroRodriguezDelRio / nov-fams-pipeline
  ☆11Updated 3 months ago
• raeslab / omixer-rpm
  A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
  ☆27Updated 6 years ago
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆35Updated 3 months ago
• cjneely10 / MetaSanity
  Pipeline for major biological analyses.
  ☆35Updated 3 years ago
• apcamargo / taxopy
  A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers
  ☆50Updated 4 months ago
• pereiramemo / BiG-MEx
  BiG-MEx implementation as Docker images and R packages
  ☆13Updated 3 years ago
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆86Updated 2 years ago
• nf-core / metapep
  From metagenomes to epitopes and beyond
  ☆12Updated 3 weeks ago
• UCSC-LoweLab / tRNAscan-SE
  A program for detection of tRNA genes
  ☆61Updated 2 years ago
• morgannprice / PaperBLAST
  PaperBLAST: find papers about a protein or its homologs
  ☆39Updated last month
• gem-pasteur / macsyfinder
  MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
  ☆62Updated 6 months ago
• BackofenLab / CRISPRcasIdentifier
  Machine learning for accurate identification and classification of CRISPR-Cas systems
  ☆22Updated 6 months ago
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆55Updated 4 years ago
• gamcil / clustermap.js
  ☆31Updated 3 years ago
• Serka-M / Digester-MultiSequencing
  Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing
  ☆21Updated 2 years ago