Alternatives and similar repositories for NGS-analysis

Users that are interested in NGS-analysis are comparing it to the libraries listed below

• jmzeng1314 / NGS-pipeline
  By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline
  ☆328Updated 6 years ago
• twbattaglia / RNAseq-workflow
  A repository for setting up a RNAseq workflow
  ☆440Updated 8 years ago
• xuzhougeng / Learn-Bioinformatics-by-RNA-seq
  ☆183Updated 8 years ago
• jmzeng1314 / 5years
  ☆246Updated 5 years ago
• jmzeng1314 / my_WGCNA
  ☆283Updated 5 years ago
• hbctraining / In-depth-NGS-Data-Analysis-Course
  ☆443Updated 5 years ago
• Cloufield / GWASTutorial
  GWAS Tutorial for Beginners
  ☆312Updated last week
• WGLab / dragonstar2019
  ☆135Updated 5 years ago
• nservant / HiC-Pro
  HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
  ☆418Updated last year
• Ming-Lian / Bioinfo_LeetCode
  让我们以刷LeetCode题目的形式，来编程解决生物信息学问题吧，Come on
  ☆197Updated 2 years ago
• gao-lab / Guideline-for-Computational-Biology-and-Bioinformatics
  ☆357Updated 3 months ago
• ENCODE-DCC / atac-seq-pipeline
  ENCODE ATAC-seq pipeline
  ☆427Updated last year
• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆310Updated 2 years ago
• jmzeng1314 / my-R
  a small collection for my R scripts
  ☆165Updated 6 years ago
• rvalieris / parallel-fastq-dump
  parallel fastq-dump wrapper
  ☆299Updated 2 years ago
• hbctraining / DGE_workshop
  ☆394Updated 3 years ago
• broadinstitute / gtex-pipeline
  GTEx & TOPMed data production and analysis pipelines
  ☆377Updated 2 months ago
• jmzeng1314 / bioinformatics123
  ☆157Updated 7 years ago
• Ming-Lian / Bioinformatics-skills
  生物信息学技能提升，专注于工具使用与编程
  ☆156Updated 3 years ago
• ENCODE-DCC / chip-seq-pipeline2
  ENCODE ChIP-seq pipeline
  ☆271Updated last year
• FelixKrueger / Bismark
  A tool to map bisulfite converted sequence reads and determine cytosine methylation states
  ☆431Updated 2 weeks ago
• Xinglab / rmats-turbo
  ☆270Updated 9 months ago
• menghaowei / ngs_learning
  生物信息学交流资料
  ☆260Updated 5 years ago
• Boyle-Lab / Blacklist
  Application for making ENCODE Blacklists
  ☆317Updated 4 years ago
• FelixKrueger / TrimGalore
  A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…
  ☆523Updated 5 months ago
• CebolaLab / RNA-seq
  Step-by-step analysis pipeline for RNA-seq data
  ☆140Updated last year
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆344Updated last year
• snakemake-workflows / dna-seq-gatk-variant-calling
  This Snakemake pipeline implements the GATK best-practices workflow
  ☆257Updated 2 years ago
• jmzeng1314 / scRNA_smart_seq2
  ☆311Updated 6 years ago
• YongxinLiu / QIIME2ChineseManual
  QIIME 2中文文档(QIIME 2 Chinese Manual)
  ☆289Updated 2 years ago