Alternatives and similar repositories for NGS-analysis:

Users that are interested in NGS-analysis are comparing it to the libraries listed below

• jmzeng1314 / NGS-pipeline
  By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline
  ☆324Updated 6 years ago
• xuzhougeng / Learn-Bioinformatics-by-RNA-seq
  ☆180Updated 7 years ago
• twbattaglia / RNAseq-workflow
  A repository for setting up a RNAseq workflow
  ☆428Updated 7 years ago
• WGLab / dragonstar2019
  ☆135Updated 5 years ago
• Ming-Lian / Bioinformatics-skills
  生物信息学技能提升，专注于工具使用与编程
  ☆149Updated 3 years ago
• jmzeng1314 / my_WGCNA
  ☆278Updated 5 years ago
• jmzeng1314 / 5years
  ☆239Updated 5 years ago
• hbctraining / In-depth-NGS-Data-Analysis-Course
  ☆441Updated 4 years ago
• jmzeng1314 / my-R
  a small collection for my R scripts
  ☆166Updated 6 years ago
• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆302Updated 2 years ago
• Cloufield / GWASTutorial
  GWAS Tutorial for Beginners
  ☆248Updated 3 months ago
• indexofire / pathongs
  Pathogen NGS Documentary
  ☆143Updated 11 months ago
• ENCODE-DCC / atac-seq-pipeline
  ENCODE ATAC-seq pipeline
  ☆411Updated 8 months ago
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆338Updated 8 months ago
• jmzeng1314 / scRNA_smart_seq2
  ☆306Updated 5 years ago
• nservant / HiC-Pro
  HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
  ☆400Updated last year
• gao-lab / Guideline-for-Computational-Biology-and-Bioinformatics
  ☆334Updated 3 years ago
• hbctraining / Intro-to-rnaseq-hpc-O2
  This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
  ☆167Updated 4 years ago
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆606Updated 10 months ago
• hbctraining / DGE_workshop
  ☆390Updated 3 years ago
• rvalieris / parallel-fastq-dump
  parallel fastq-dump wrapper
  ☆290Updated last year
• deeptools / deepTools
  Tools to process and analyze deep sequencing data.
  ☆711Updated this week
• FelixKrueger / Bismark
  A tool to map bisulfite converted sequence reads and determine cytosine methylation states
  ☆414Updated 3 months ago
• FelixKrueger / TrimGalore
  A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…
  ☆496Updated 3 weeks ago
• ShujiaHuang / ilus
  A lightweight and handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysi…
  ☆132Updated 3 months ago
• ENCODE-DCC / chip-seq-pipeline2
  ENCODE ChIP-seq pipeline
  ☆264Updated last year
• bxlab / metaWRAP
  MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
  ☆418Updated last year
• Teichlab / scg_lib_structs
  Collections of library structure and sequence of popular single cell genomic methods
  ☆457Updated 4 months ago
• Boyle-Lab / Blacklist
  Application for making ENCODE Blacklists
  ☆296Updated 3 years ago
• jmzeng1314 / bioinformatics123
  ☆154Updated 7 years ago