Alternatives and similar repositories for NGS-pipeline

Users that are interested in NGS-pipeline are comparing it to the libraries listed below

• jmzeng1314 / my_WGCNA
  ☆278Updated 5 years ago
• jmzeng1314 / my-R
  a small collection for my R scripts
  ☆165Updated 6 years ago
• xuzhougeng / Learn-Bioinformatics-by-RNA-seq
  ☆183Updated 7 years ago
• twbattaglia / RNAseq-workflow
  A repository for setting up a RNAseq workflow
  ☆434Updated 8 years ago
• jmzeng1314 / 5years
  ☆242Updated 5 years ago
• Ming-Lian / NGS-analysis
  二代测序数据分析
  ☆371Updated last year
• jmzeng1314 / scRNA_smart_seq2
  ☆311Updated 5 years ago
• hbctraining / In-depth-NGS-Data-Analysis-Course
  ☆444Updated 5 years ago
• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆309Updated 2 years ago
• ENCODE-DCC / atac-seq-pipeline
  ENCODE ATAC-seq pipeline
  ☆424Updated 11 months ago
• ENCODE-DCC / chip-seq-pipeline2
  ENCODE ChIP-seq pipeline
  ☆270Updated last year
• Cloufield / GWASTutorial
  GWAS Tutorial for Beginners
  ☆297Updated last month
• broadinstitute / gtex-pipeline
  GTEx & TOPMed data production and analysis pipelines
  ☆374Updated last month
• hbctraining / DGE_workshop
  ☆394Updated 3 years ago
• nservant / HiC-Pro
  HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
  ☆412Updated last year
• WeiSong-bio / jmzeng1314-5years-summarize
  ☆118Updated 6 years ago
• shenlab-sinai / ngsplot
  Quick mining and visualization of NGS data by integrating genomic databases
  ☆267Updated 2 years ago
• WGLab / dragonstar2019
  ☆135Updated 5 years ago
• Teichlab / scg_lib_structs
  Collections of library structure and sequence of popular single cell genomic methods
  ☆471Updated last month
• FelixKrueger / Bismark
  A tool to map bisulfite converted sequence reads and determine cytosine methylation states
  ☆425Updated 2 months ago
• jmzeng1314 / tcga_example
  ☆288Updated 6 years ago
• junjunlab / ClusterGVis
  One-step to Cluster and Visualize Gene Expression Matrix
  ☆311Updated 3 weeks ago
• Boyle-Lab / Blacklist
  Application for making ENCODE Blacklists
  ☆313Updated 4 years ago
• jmzeng1314 / R_bilibili
  ☆171Updated 6 years ago
• crazyhottommy / ChIP-seq-analysis
  ChIP-seq analysis notes from Ming Tang
  ☆809Updated 11 months ago
• genecell / single-cell-papers-with-code
  Papers with code for single cell related papers
  ☆288Updated 2 years ago
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆342Updated 11 months ago
• Xinglab / rmats-turbo
  ☆263Updated 7 months ago
• hbctraining / Intro-to-DGE
  ☆202Updated 3 months ago
• liulab-dfci / TRUST4
  TCR and BCR assembly from RNA-seq data
  ☆316Updated last week