Alternatives and similar repositories for NGS-pipeline

Users that are interested in NGS-pipeline are comparing it to the libraries listed below

• jmzeng1314 / my-R
  a small collection for my R scripts
  ☆166Updated 6 years ago
• jmzeng1314 / my_WGCNA
  ☆290Updated 6 years ago
• twbattaglia / RNAseq-workflow
  A repository for setting up a RNAseq workflow
  ☆447Updated 8 years ago
• xuzhougeng / Learn-Bioinformatics-by-RNA-seq
  ☆186Updated 8 years ago
• jmzeng1314 / 5years
  ☆250Updated 6 years ago
• jmzeng1314 / scRNA_smart_seq2
  ☆314Updated 6 years ago
• Ming-Lian / NGS-analysis
  二代测序数据分析
  ☆377Updated 2 years ago
• hbctraining / In-depth-NGS-Data-Analysis-Course
  ☆442Updated 5 years ago
• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆317Updated 2 years ago
• ENCODE-DCC / atac-seq-pipeline
  ENCODE ATAC-seq pipeline
  ☆436Updated last year
• WeiSong-bio / jmzeng1314-5years-summarize
  ☆119Updated 6 years ago
• hbctraining / DGE_workshop
  ☆402Updated 3 years ago
• ENCODE-DCC / chip-seq-pipeline2
  ENCODE ChIP-seq pipeline
  ☆275Updated last year
• Boyle-Lab / Blacklist
  Application for making ENCODE Blacklists
  ☆329Updated 4 years ago
• Cloufield / GWASTutorial
  GWAS Tutorial for Beginners
  ☆349Updated 2 months ago
• shenlab-sinai / ngsplot
  Quick mining and visualization of NGS data by integrating genomic databases
  ☆268Updated 2 years ago
• biotrainee / RiA2
  Source code for R in Action, Second Edition
  ☆29Updated 8 years ago
• jmzeng1314 / R_bilibili
  ☆170Updated 6 years ago
• broadinstitute / gtex-pipeline
  GTEx & TOPMed data production and analysis pipelines
  ☆390Updated 2 months ago
• Xinglab / rmats-turbo
  ☆282Updated last month
• nservant / HiC-Pro
  HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
  ☆428Updated last year
• FelixKrueger / Bismark
  A tool to map bisulfite converted sequence reads and determine cytosine methylation states
  ☆438Updated 3 months ago
• jmzeng1314 / tcga_example
  ☆293Updated 6 years ago
• junjunlab / ClusterGVis
  One-step to Cluster and Visualize Gene Expression Matrix
  ☆334Updated 2 weeks ago
• Teichlab / scg_lib_structs
  Collections of library structure and sequence of popular single cell genomic methods
  ☆486Updated 6 months ago
• WGLab / dragonstar2019
  ☆136Updated 6 years ago
• nf-core / atacseq
  ATAC-seq peak-calling and QC analysis pipeline
  ☆218Updated 2 weeks ago
• sdparekh / zUMIs
  zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
  ☆286Updated last year
• nf-core / chipseq
  ChIP-seq peak-calling, QC and differential analysis pipeline.
  ☆226Updated 2 weeks ago
• hbctraining / Intro-to-DGE
  ☆211Updated 3 months ago