Alternatives and similar repositories for NGS-pipeline

Users that are interested in NGS-pipeline are comparing it to the libraries listed below

• jmzeng1314 / my-R

  View on GitHub
  a small collection for my R scripts
  ☆166Mar 1, 2019Updated 6 years ago
• jmzeng1314 / scRNA_smart_seq2

  View on GitHub
  ☆319Aug 19, 2019Updated 6 years ago
• xuzhougeng / R-ChIP-data-analysis

  View on GitHub
  ☆51Sep 21, 2018Updated 7 years ago
• jmzeng1314 / ChIP-seq-analysis

  View on GitHub
  ChIP-seq analysis notes from Tommy Tang
  ☆19Jun 28, 2016Updated 9 years ago
• jmzeng1314 / GEO

  View on GitHub
  ☆861Oct 18, 2022Updated 3 years ago
• jmzeng1314 / bioinformatics123

  View on GitHub
  ☆160Dec 12, 2017Updated 8 years ago
• jmzeng1314 / my_WGCNA

  View on GitHub
  ☆295Sep 28, 2019Updated 6 years ago
• jmzeng1314 / bioinformatics_links

  View on GitHub
  ☆10Jul 15, 2016Updated 9 years ago
• hbctraining / In-depth-NGS-Data-Analysis-Course

  View on GitHub
  ☆444Jun 15, 2020Updated 5 years ago
• jmzeng1314 / tcga_example

  View on GitHub
  ☆294Apr 2, 2019Updated 6 years ago
• Ming-Lian / NGS-analysis

  View on GitHub
  二代测序数据分析
  ☆377Dec 6, 2023Updated 2 years ago
• jmzeng1314 / my-perl

  View on GitHub
  some short but practical PERL script in NGS data analysis
  ☆16Oct 30, 2017Updated 8 years ago
• jmzeng1314 / BPscRNAseq

  View on GitHub
  ☆10Aug 22, 2018Updated 7 years ago
• Yixf-Education / course_Statistics_Story

  View on GitHub
  天津医科大学，本科选修课，《故事中的统计学》课程资料
  ☆33Nov 3, 2025Updated 3 months ago
• Tong-Chen / NGS

  View on GitHub
  Scripts for next generation sequencing
  ☆49Nov 13, 2019Updated 6 years ago
• jmzeng1314 / 5years

  View on GitHub
  ☆254Oct 28, 2019Updated 6 years ago
• jmzeng1314 / IDmap

  View on GitHub
  ☆12Dec 5, 2018Updated 7 years ago
• WGLab / dragonstar2019

  View on GitHub
  ☆136Aug 30, 2019Updated 6 years ago
• jmzeng1314 / scRNA_10X

  View on GitHub
  ☆95Aug 20, 2019Updated 6 years ago
• jmzeng1314 / rnaseq_tutorial

  View on GitHub
  Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…
  ☆16Aug 6, 2019Updated 6 years ago
• xuzhougeng / Learn-Bioinformatics-by-RNA-seq

  View on GitHub
  ☆187Aug 16, 2017Updated 8 years ago
• crazyhottommy / ChIP-seq-analysis

  View on GitHub
  ChIP-seq analysis notes from Ming Tang
  ☆841Aug 5, 2024Updated last year
• jmzeng1314 / myScRNA-seq

  View on GitHub
  ☆14Nov 3, 2017Updated 8 years ago
• jmzeng1314 / rna-seq-example

  View on GitHub
  An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)
  ☆14Jul 3, 2012Updated 13 years ago
• xuzhougeng / RNA-seq-downstream-analysis

  View on GitHub
  Arabidopsis RNA_-seq downstream analysis shiny app
  ☆30Jul 22, 2019Updated 6 years ago
• OmicsAcademy / bioinf2019

  View on GitHub
  ☆29Apr 20, 2019Updated 6 years ago
• jmzeng1314 / humanid

  View on GitHub
  my first R package just for testing
  ☆43May 16, 2019Updated 6 years ago
• jmzeng1314 / methy_array

  View on GitHub
  ☆105Mar 23, 2020Updated 5 years ago
• fenghen360 / HomBlocks

  View on GitHub
  HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching
  ☆36Aug 7, 2017Updated 8 years ago
• theislab / single-cell-tutorial

  View on GitHub
  Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…
  ☆1,549Dec 11, 2022Updated 3 years ago
• CJ-Chen / TBtools-II

  View on GitHub
  GUI/CommandLine Tool Box for biologistists to utilize NGS data.
  ☆1,028Jan 29, 2026Updated 2 weeks ago
• jmzeng1314 / myShiny

  View on GitHub
  ☆17Dec 15, 2017Updated 8 years ago
• WGLab / lncScore

  View on GitHub
  A python package for the identification of lncRNA from the assembled novel transcripts
  ☆17Oct 28, 2021Updated 4 years ago
• jmzeng1314 / mouse-xx-xy-C1

  View on GitHub
  ☆18Aug 19, 2019Updated 6 years ago
• shenlab-sinai / ngsplot

  View on GitHub
  Quick mining and visualization of NGS data by integrating genomic databases
  ☆268May 5, 2023Updated 2 years ago
• JinfengChen / Scripts

  View on GitHub
  ☆76Apr 23, 2020Updated 5 years ago
• crazyhottommy / RNA-seq-analysis

  View on GitHub
  RNAseq analysis notes from Ming Tang
  ☆1,069Nov 15, 2021Updated 4 years ago
• jmzeng1314 / IRseq

  View on GitHub
  ☆10Jun 15, 2017Updated 8 years ago
• likelet / LncPipe

  View on GitHub
  A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets
  ☆84Oct 22, 2022Updated 3 years ago