VariantSpark is a framework for applying Spark-based Machine Learning methods to whole-genome variant information
☆33Sep 28, 2017Updated 8 years ago
Alternatives and similar repositories for VariantSpark
Users that are interested in VariantSpark are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An example of bioinformatics and bigdata tools can playing nicely together☆14May 17, 2016Updated 10 years ago
- Minimal docker image for bwa. Not developed any more.☆11Apr 26, 2015Updated 11 years ago
- ☆11Dec 8, 2022Updated 3 years ago
- Parallel Genomic Analysis Toolkit☆14Feb 11, 2019Updated 7 years ago
- Curriculum Vitae☆14May 8, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- PASTASpark is an extension to PASTA (Practical Alignments using SATé and TrAnsitivity) that allows to execute it on a distributed memory …☆10Mar 19, 2019Updated 7 years ago
- SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…☆70Sep 5, 2019Updated 6 years ago
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 9 years ago
- Hemang Parikh☆11Jan 12, 2016Updated 10 years ago
- heuristics to merge structural variant calls in VCF format.☆38Oct 6, 2016Updated 9 years ago
- ☆12Feb 19, 2017Updated 9 years ago
- Python client for GA4GH htsget protocol☆15Nov 7, 2022Updated 3 years ago
- Stupid Simple Structural Variant View☆25Nov 21, 2016Updated 9 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Jul 29, 2019Updated 6 years ago
- This is a read-only mirror of the CRAN R package repository. PopGenome — An Efficient Swiss Army Knife for Population Genomic Analyses …☆16Feb 3, 2020Updated 6 years ago
- Quick Read Quality Control☆20Feb 28, 2023Updated 3 years ago
- ☆29Feb 17, 2021Updated 5 years ago
- Genetic changes we can believe in: a web based tool for variant visualization and analysis☆18Apr 17, 2013Updated 13 years ago
- Fast, Accurate, and Complete SSR Detection in Genomic Sequences☆11Jun 29, 2020Updated 6 years ago
- Exploration, clustering, visualization and classification of DNA damage patterns☆19Jan 15, 2021Updated 5 years ago
- A fast, parallel, streaming multipart uploader for S3☆14Mar 23, 2017Updated 9 years ago
- Integrated Variant Caller☆17Mar 15, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Analysis and figure generation code for the ABRF NGS Phase II Study on DNA-seq reproducibility☆18Aug 5, 2021Updated 4 years ago
- ☆13Feb 12, 2022Updated 4 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Oct 22, 2019Updated 6 years ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Nov 4, 2019Updated 6 years ago
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- Mutation rate analysis of autosomal loci☆15Jun 25, 2020Updated 6 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆406Jun 16, 2026Updated last month
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 3 months ago
- Integrate the GA4GH schemas and probably a scala impl of the service.☆14May 20, 2016Updated 10 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Sep 24, 2018Updated 7 years ago
- Old repo for R interface for GraphFrames☆13Mar 21, 2018Updated 8 years ago
- ☆24Jan 25, 2024Updated 2 years ago
- Ready-to-go Parquet-formatted public 'omics datasets☆30Nov 2, 2015Updated 10 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆40Jul 9, 2021Updated 5 years ago
- A utility for merging and genotyping Illumina-style GVCFs.☆34Feb 26, 2019Updated 7 years ago
- Gene lists related to cancer immunotherapy☆14Sep 11, 2024Updated last year