genomoncology / biomcp-examplesLinks
Example chats from running BioMCP for demonstrations
☆17Updated 5 months ago
Alternatives and similar repositories for biomcp-examples
Users that are interested in biomcp-examples are comparing it to the libraries listed below
Sorting:
- Python toolbox for multi-omics data mapping and analysis☆27Updated 2 years ago
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Updated 7 years ago
- ☆12Updated last year
- WIP : regular expressions for identifying and extracting values from HGVS nomenclature☆14Updated 7 years ago
- The Agentic BioML Challenge + AutoBioML framework☆18Updated 6 months ago
- Python client for GA4GH htsget protocol☆15Updated 3 years ago
- A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list☆37Updated 2 years ago
- Repository for development of the genomic module of the CDM.☆23Updated 6 years ago
- [DEPRECATED] An R package for Google Genomics API queries.☆45Updated 2 years ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Updated 7 years ago
- A framework for network analysis and display of SNPs☆19Updated 9 years ago
- ☆13Updated 6 years ago
- PRSKB is a website and command-line interface tool for calculating polygenic risk scores using GWA studies from the NHGRI-EBI Catalog.☆30Updated last year
- Bioinformatic MCP server that wraps the most useful functions of the gget library☆21Updated last month
- 🔍 Enable AI assistants to search and access bioRxiv papers through a simple MCP interface.☆20Updated 9 months ago
- Python client for MyVariant.info web services.☆23Updated 11 months ago
- Refining the impact of genetic evidence on clinical success☆27Updated last year
- Companion repo for ExAC paper, 2015☆33Updated 9 years ago
- DataMap is a browser-based app for visualizing data using heatmaps, PCA plots, and t-SNE plots.☆61Updated 6 months ago
- Analysis on stop reasons☆10Updated last year
- A MatchMaker Exchange server☆12Updated 4 months ago
- Project Organization and Management for Genomics☆25Updated last week
- LLM agents for working with the SRA and associated bioinformatics databases.☆141Updated last month
- This repository contains Jupyter Notebooks containing GATK Best Practices Workflows☆26Updated 5 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated last month
- SQL support plugin for Nextflow☆32Updated 3 months ago
- MatchMiner: An open source computational platform for matching genomic profiles to precision cancer medicine clinical trials☆46Updated 3 years ago
- geneSurv: an interactive web-based tool for survival analysis in genomics research☆17Updated 5 years ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆23Updated 11 months ago
- R package with netDx software and data for examples☆12Updated 2 years ago