d3b-center / bixtools
🐳 Dockerfiles for bioinformatics tools
☆16Updated last month
Alternatives and similar repositories for bixtools:
Users that are interested in bixtools are comparing it to the libraries listed below
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- RNA Fusion Detection and Quantification☆17Updated 6 years ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆55Updated 5 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 2 months ago
- Generic human DNA variant annotation pipeline☆58Updated last year
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆36Updated 4 years ago
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Cromwell output organizer☆13Updated 3 years ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 11 months ago
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆46Updated 2 years ago
- Kourami: Graph-guided assembly for HLA alleles☆38Updated 5 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- ☆23Updated 6 years ago
- Filters for false-positive mutation calls in NGS☆30Updated 6 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆80Updated 4 months ago
- A tool to call somatic single nucleotide variants.☆41Updated 9 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- This repository contains Jupyter Notebooks containing GATK Best Practices Workflows☆26Updated 5 years ago
- VEP Plugin to annotate high-impact five prime UTR variants☆26Updated 8 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆46Updated this week
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.☆4Updated last year
- Automated human exome/genome variants detection from FASTQ files☆22Updated 3 years ago
- This repository contains course materials from JAX-BD2K workshop.☆31Updated 5 years ago