PMCC-BioinformaticsCore / janisLinks
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
☆44Updated 2 years ago
Alternatives and similar repositories for janis
Users that are interested in janis are comparing it to the libraries listed below
Sorting:
- conda recipes for genomic data☆84Updated 4 years ago
- Reference genome resource manager☆74Updated 2 weeks ago
- Bioinformatics curated workflows that use Biocontainers tools☆19Updated 6 years ago
- Testing building mulled containers for multi-requirement tools.☆83Updated this week
- Simple pure Python SAM parser and objects for working with SAM records☆64Updated 3 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆57Updated last week
- Portable WDL workflows for IDseq production pipelines☆32Updated 3 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 5 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Workflows for converting between sequence data formats☆39Updated 4 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- Create WDL documentation using Markdown.☆28Updated last month
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Updated 4 years ago
- A collection of reusable WDL tasks. Category:Other☆88Updated 2 weeks ago
- List of IARC bioinformatics pipelines and resources☆55Updated last month
- Demonstrating best practices for bioinformatics command line tools☆26Updated 5 years ago
- Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…☆30Updated last month
- Bio-dockers: dockerized bioinformatic tools☆32Updated 4 months ago
- Example project for integrating igv.js and flask☆26Updated 7 months ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- A C library for handling bigWig files☆81Updated 11 months ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 3 years ago
- Web application to collect and visualise data across multiple MultiQC runs.☆95Updated last year
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- Linter rules for Nextflow DSL scripts☆33Updated 3 weeks ago
- Mapped QC analysis program☆44Updated 7 years ago
- Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…☆71Updated 2 months ago
- Monitor computational workflows in real time☆74Updated last year
- VariantGrid public repo☆24Updated last week