[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
☆44Sep 17, 2023Updated 2 years ago
Alternatives and similar repositories for janis
Users that are interested in janis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide☆13May 5, 2026Updated 3 months ago
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆36May 28, 2025Updated last year
- Python utilities for CWL☆43Aug 24, 2026Updated last week
- Python client for GA4GH htsget protocol☆15Nov 7, 2022Updated 3 years ago
- A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample☆26Jul 27, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Accumulating container resource usage with workflow metadata☆19Mar 17, 2021Updated 5 years ago
- ☆22Oct 6, 2023Updated 2 years ago
- A collection of reusable WDL tasks. Category:Other☆89Updated this week
- WDL plugin for pytest☆49Aug 1, 2023Updated 3 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Jan 12, 2022Updated 4 years ago
- Helper script for bioconductor/bioconductor_docker☆13May 19, 2026Updated 3 months ago
- ☆13Apr 2, 2025Updated last year
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Apr 20, 2020Updated 6 years ago
- Analysis pipeline for cancer sequencing data☆112Apr 24, 2026Updated 4 months ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆17Jun 14, 2023Updated 3 years ago
- Create cwl workflows by writing a simple Python script☆39Apr 29, 2020Updated 6 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 5 years ago
- AWS Quick Start Team☆24Oct 3, 2024Updated last year
- (WIP) best-practices workflow for rare disease☆64Jul 1, 2024Updated 2 years ago
- CWL CommandLineTool descriptions for biology/life-sciences related applications☆81Mar 25, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Create WDL documentation using Markdown.☆29Nov 25, 2025Updated 9 months ago
- Build and maintain multiple custom conda environments all in one place.☆40Dec 3, 2024Updated last year
- R tools to interact with hap.py output☆16Jul 12, 2019Updated 7 years ago
- IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.☆17May 5, 2026Updated 3 months ago
- CAVA (Clinical Annotation of VAriants)☆14Sep 28, 2018Updated 7 years ago
- ☆11Dec 8, 2022Updated 3 years ago
- Common Workflow Language reference implementation☆375Updated this week
- Trigger CWL workflows via GA4GH WES and TES☆18Jul 22, 2026Updated last month
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Sep 16, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Feb 12, 2022Updated 4 years ago
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Sep 24, 2018Updated 7 years ago
- Open workflow definitions for genomic analysis from MGI at WUSM.☆107Jun 23, 2025Updated last year
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆30Nov 27, 2025Updated 9 months ago
- Workflow Description Language developer tools & local runner☆206Aug 22, 2026Updated last week
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆333Updated this week
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Feb 14, 2021Updated 5 years ago