Alternatives and similar repositories for janis

Users that are interested in janis are comparing it to the libraries listed below

• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆84Updated 4 years ago
• BioContainers / workflows
  Bioinformatics curated workflows that use Biocontainers tools
  ☆19Updated 6 years ago
• refgenie / refgenie
  Reference genome resource manager
  ☆74Updated last month
• stjudecloud / workflows
  Bioinformatics workflows developed for and used on the St. Jude Cloud project.
  ☆38Updated this week
• bionitio-team / bionitio-python
  Demonstrating best practices for bioinformatics command line tools
  ☆25Updated 5 years ago
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆83Updated this week
• igvteam / igv.js-flask
  Example project for integrating igv.js and flask
  ☆26Updated 8 months ago
• 4dn-dcic / tibanna
  Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…
  ☆71Updated 3 months ago
• nh13 / snakeparse
  Making Snakemake workflows into full-fledged command line tools since 1999.
  ☆51Updated 7 years ago
• Clinical-Genomics / BALSAMIC
  Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
  ☆57Updated last week
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 6 years ago
• chanzuckerberg / idseq-workflows
  Portable WDL workflows for IDseq production pipelines
  ☆32Updated 4 years ago
• aryeelab / umi
  Preprocessing tools for unique molecular index (UMI) sequencing reads
  ☆31Updated 2 years ago
• dpryan79 / libBigWig
  A C library for handling bigWig files
  ☆81Updated last year
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆74Updated last year
• macarthur-lab / gnomad_browser
  gnomAD browser pre-ASHG 2018
  ☆33Updated 5 years ago
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆36Updated last week
• Clinical-Genomics / chanjo
  Chanjo provides a better way to analyze coverage data in clinical sequencing.
  ☆50Updated 2 months ago
• common-workflow-lab / wdl2cwl
  [Experimental] Workflow Definition Language (WDL) to CWL
  ☆28Updated 4 years ago
• Snakemake-Profiles / doc
  Documentation of the Snakemake-Profiles project.
  ☆55Updated 3 years ago
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆88Updated 2 months ago
• jdidion / atropos
  An NGS read trimming tool that is specific, sensitive, and speedy. (production)
  ☆126Updated 9 months ago
• roryk / tiny-test-data
  Super small biological datasets for unit testing
  ☆62Updated 6 years ago
• pachterlab / kma
  Keep Me Around: Intron Retention Detection
  ☆30Updated 7 years ago
• eilbecklab / clinvar-miner
  Website to analyze conflicting assertions in ClinVar
  ☆19Updated 2 weeks ago
• SACGF / variantgrid
  VariantGrid public repo
  ☆24Updated this week
• rgcgithub / clamms
  CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.
  ☆30Updated 4 years ago
• brentp / geneimpacts
  prioritize effects of variant annotations from VEP, SnpEff, et al.
  ☆34Updated last year
• biocorecrg / BioNextflow
  A collection of modules and sub-workflows for Nextflow
  ☆28Updated this week
• Molmed / checkQC
  CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria
  ☆29Updated 2 months ago