An extensible Ruby on Rails web-service application and database for visualising HTGS data
☆18Mar 7, 2014Updated 12 years ago
Alternatives and similar repositories for gee_fu
Users that are interested in gee_fu are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A ruby API to the Ensembl database☆40Aug 18, 2011Updated 14 years ago
- Build components for CloudMan, Galaxy on the Cloud, or Galaxy Server☆20Jun 27, 2017Updated 8 years ago
- Sample Level Analysis of Pathway Alteration Enrichments☆10Jan 21, 2019Updated 7 years ago
- A workflow assembler for cancer genome analytics and informatics☆19Nov 16, 2016Updated 9 years ago
- Chef Recipies -- For working with Vagrant. Mostly out of date.☆14Dec 5, 2011Updated 14 years ago
- Five pillars of computational reproducibility☆11Feb 6, 2024Updated 2 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆29Jul 18, 2025Updated 8 months ago
- A Ruby CalDAV client☆39Jul 26, 2008Updated 17 years ago
- Gene lists related to cancer immunotherapy☆14Sep 11, 2024Updated last year
- Searching large collections of sequencing data with genome-scale queries☆17Feb 5, 2026Updated last month
- UniqTag: Content-derived unique and stable identifiers for gene annotation☆10May 4, 2015Updated 10 years ago
- This plugins is intended to wrap the common software used for Next Generation Sequencing data☆28Jan 18, 2023Updated 3 years ago
- An exception handler for OpsCode Chef runs, GitHub Gist & IRC.☆20Jul 8, 2012Updated 13 years ago
- ☆13Sep 18, 2018Updated 7 years ago
- Reference-based compression of SRA data☆37Mar 26, 2013Updated 12 years ago
- Like the X-Men nightcrawler this gem teleports your assets to a OpenStack Swift bucket/container☆23Aug 23, 2017Updated 8 years ago
- k1pwit lets you to directly input passwords using 1Password on iTerm2, not via clipboard, just as though you do on Web browsers.☆10Jun 4, 2022Updated 3 years ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆21Dec 9, 2025Updated 3 months ago
- Small but powerful client to interact with OpenStack Swift☆15Jan 18, 2021Updated 5 years ago
- Phylotype your strains using Clermont's 2013 method: ezclermont.org☆15Aug 5, 2022Updated 3 years ago
- swift-cli provides pipelined streaming access to OpenStack Swift☆15May 26, 2017Updated 8 years ago
- Smallest Docker Ruby image☆12Nov 9, 2015Updated 10 years ago
- Paired reads mapping on de Bruijn graph☆13Jan 15, 2019Updated 7 years ago
- The open source version of the Melbourne Genomics Health Alliance Exome Sequencing Pipeline☆33Jan 20, 2018Updated 8 years ago
- Contains the code and workflow for the bacterial strain definition paper with Kostas Kostantinidis☆14Dec 4, 2023Updated 2 years ago
- Utilities for Samtools ( http://samtools.sourceforge.net/ )☆18Sep 26, 2011Updated 14 years ago
- Cloud computing management console - initially for Chef Server with EC2☆25Jun 3, 2013Updated 12 years ago
- BigWig manpulation tools using libBigWig and htslib☆30Aug 8, 2024Updated last year
- Curated collection of open-source bioinformatics tools☆28Feb 5, 2019Updated 7 years ago
- genome simulation across a population with zeta-distributed allele frequency, snps, insertions, deletions, and multi-nucleotide polymorph…☆16Mar 3, 2022Updated 4 years ago
- Weka Monitoring via Grafana, Prometheus, etc.☆11Mar 6, 2026Updated 2 weeks ago
- open source high throughput homogeneous liquid handler ( automated pipette )☆17Sep 20, 2011Updated 14 years ago
- Base for the Viral Genomics and Bioinformatics Repository☆17Jul 5, 2024Updated last year
- Pynocular is a lightweight ORM that lets you query your database using Pydantic models and asyncio☆12May 24, 2022Updated 3 years ago
- A powerful toolset for genome arithmetic.☆142May 28, 2021Updated 4 years ago
- swift commander is a wrapper for various command line openstack swift clients to provide a simplified user interface☆13Nov 19, 2020Updated 5 years ago
- A fork of `z' by rupa deadwyler with much improved zsh/bash completion and better results. The data file format and core algorithm are c…☆42Jan 5, 2023Updated 3 years ago
- ChIP-seq peak calling with GC effects adjustment☆10Jul 5, 2018Updated 7 years ago
- ☆13Nov 28, 2018Updated 7 years ago