danmaclean / gee_fuLinks
An extensible Ruby on Rails web-service application and database for visualising HTGS data
☆18Updated 11 years ago
Alternatives and similar repositories for gee_fu
Users that are interested in gee_fu are comparing it to the libraries listed below
Sorting:
- Gene lists related to cancer immunotherapy☆14Updated last year
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆31Updated 9 years ago
- Utility programs to trim or sort Illumina reads with adapter sequences☆15Updated 12 years ago
- Tools for bam file processing☆55Updated 10 years ago
- Smart VCF parser DSL☆83Updated 3 years ago
- Tools for producing pseudo-cgh of next-generation sequencing data☆18Updated 9 years ago
- ☆38Updated 3 weeks ago
- Porting of samtools-ruby to BioRuby. Binder of samtools for ruby, on the top of FFI -from original project-☆33Updated 6 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 4 years ago
- Convert CWL to WDL☆17Updated 9 years ago
- ☆18Updated 8 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- full taxonomer cython repository☆22Updated 6 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- command lines tool to annotate miRNAs with a standard mirna/isomir naming☆19Updated 7 months ago
- BigWig manpulation tools using libBigWig and htslib☆30Updated last year
- ☆36Updated 5 years ago
- Maximum likelihood demultiplexing☆50Updated 10 months ago
- A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes☆51Updated 11 months ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Updated 2 years ago
- ☆28Updated 2 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach☆36Updated 15 years ago
- Fast and accurate sequence demultiplexing☆28Updated 6 months ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 6 years ago
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆29Updated 3 weeks ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago