Alternatives and similar repositories for high-health:

Users that are interested in high-health are comparing it to the libraries listed below

• bigdatagenomics / eggo
  Ready-to-go Parquet-formatted public 'omics datasets
  ☆30Updated 9 years ago
• bigdatagenomics / avocado
  A Variant Caller, Distributed. Apache 2 licensed.
  ☆71Updated 5 years ago
• nfergu / popstrat
  Population Stratification Analysis on Genomics Data Using Deep Learning
  ☆26Updated 8 years ago
• bigdatagenomics / bdg-formats
  Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.
  ☆39Updated 2 months ago
• allenday / spark-genome-alignment-demo
  An example of bioinformatics and bigdata tools can playing nicely together
  ☆14Updated 8 years ago
• BauerLab / VariantSpark
  VariantSpark is a framework for applying Spark-based Machine Learning methods to whole-genome variant information
  ☆33Updated 7 years ago
• hammerlab / pageant
  Parallel Genomic Analysis Toolkit
  ☆14Updated 5 years ago
• opencb / hpg-bigdata
  This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster
  ☆17Updated 6 years ago
• BD2KGenomics / conductor
  Efficient, distributed downloads of large files from S3 to HDFS using Spark.
  ☆17Updated 7 years ago
• hammerlab / guacamole
  Spark-based variant calling, with experimental support for multi-sample somatic calling (including RNA) and local assembly
  ☆84Updated 7 years ago
• googlegenomics / datalab-examples
  Example Cloud Datalab iPython Notebooks for genomics use cases.
  ☆25Updated 7 years ago
• marcbux / Hi-WAY
  Heterogeneity-incorporating Workflow ApplicationMaster for YARN
  ☆26Updated 7 years ago
• mcapuccini / TheSparkBox
  TheSparkBox is an all-in-one Spark deployment that you can use to fire up a local cluster.
  ☆12Updated 6 years ago
• ddcap / halvade
  New url: https://github.com/biointec/halvade
  ☆19Updated 7 years ago
• googlegenomics / spark-examples
  Apache Spark jobs such as Principal Coordinate Analysis.
  ☆74Updated 7 years ago
• mcapuccini / MaRe
  MaRe leverages the power of Docker and Spark to run and scale your serial tools in MapReduce fashion.
  ☆14Updated 2 years ago
• BD2KGenomics / s3am
  A fast, parallel, streaming multipart uploader for S3
  ☆13Updated 7 years ago
• fulcrumgenomics / dagr
  A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs
  ☆69Updated 2 years ago
• BioInterchange / Ontologies
  Home of the Genomic Feature and Variation Ontology (GFVO)
  ☆16Updated 3 years ago
• bio4j / bio4j
  Bio4j abstract model and general entry point to the project
  ☆118Updated 8 years ago
• bigdatagenomics / utils
  General utility code used across BDG products. Apache 2 licensed.
  ☆18Updated last year
• adaptivegenome / openge
  An accelerated framework for manipulating and interpreting high-throughput sequencing data
  ☆26Updated 11 years ago
• allenai / pipeline
  Library for building reproducible data pipelines to support experimentation
  ☆20Updated 9 years ago
• Caleydo / caleydo
  Caleydo - Visualization for Molecular Biology
  ☆58Updated 8 years ago
• amplab / smash
  Benchmarking toolkit for variant calling
  ☆47Updated 4 years ago
• verilylifesciences / variant-qc
  Quality control methods for human genomic variants.
  ☆62Updated 2 years ago
• johandahlberg / piper
  A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…
  ☆21Updated 8 years ago